Lus10000184.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10000184.g T228822_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATH1
M10627_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATH1_01
0.843 0.735
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN

NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.626 0.551
MEIS3
M03093_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.602 0.429
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.602 0.429
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.602 0.429
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR

YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.602 0.429
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10000184 Homeodomain 399 450

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HMGB15 Arabidopsis thaliana AT1G04880 D 0.000
PK27727.1 Cannabis sativa PK27727.1 I 0.000
evm.TU.supercontig_1068.1 Carica papaya evm.TU.supercontig_1068.1 I 0.000
Eucgr.H00052 Eucalyptus grandis Eucgr.H00052 I 0.000
Ciclev10005091m.g Citrus clementina Ciclev10005091m.g I 0.000
Carubv10010835m.g Capsella rubella Carubv10010835m.g I 0.000
Cagra.1671s0107 Capsella grandiflora Cagra.1671s0107 I 0.000
Cucsa.193910 Cucumis sativus Cucsa.193910 I 0.000
cassava27713.m1 Manihot esculenta cassava27713.m1 I 0.000
cassava14246.m1 Manihot esculenta cassava14246.m1 I 0.000
gene06664-v1.0-hybrid Fragaria vesca gene06664-v1.0-hybrid I 0.000
Gorai.005G130200 Gossypium raimondii Gorai.005G130200 I 0.000
Gorai.011G157600 Gossypium raimondii Gorai.011G157600 I 0.000
Thhalv10007631m.g Eutrema salsugineum Thhalv10007631m.g I 0.000
SapurV1A.5889s0010 Salix purpurea SapurV1A.5889s0010 I 0.000
SapurV1A.1542s0040 Salix purpurea SapurV1A.1542s0040 I 0.000
SapurV1A.0058s0580 Salix purpurea SapurV1A.0058s0580 I 0.000
orange1.1g046368m.g Citrus sinensis orange1.1g046368m.g I 0.000
MDP0000307705 Malus domestica MDP0000307705 I 0.000
Lus10016671.g Linum usitatissimum Lus10016671.g I 0.000
Lus10007127.g Linum usitatissimum Lus10007127.g I 0.000
29904.m002943 Ricinus communis 29904.m002943 I 0.000
Pm009491 Prunus mume Pm009491 I 0.000
Ca_21617 Cicer arietinum Ca_21617 I 0.000
GLYMA20G38761 Glycine max GLYMA20G38761 I 0.000
GLYMA10G44041 Glycine max GLYMA10G44041 I 0.000
fgenesh2_kg.1__427__AT1G04880.1 Arabidopsis lyrata fgenesh2_kg.1__427__AT1G04880.1 I 0.000
Bra032491 Brassica rapa Bra032491 I 0.000
Bra030594 Brassica rapa Bra030594 I 0.000
Bra015358 Brassica rapa Bra015358 I 0.000
Bo8g115380 Brassica oleracea Bo8g115380 I 0.000
Bo8g004290 Brassica oleracea Bo8g004290 I 0.000
Bo5g004970 Brassica oleracea Bo5g004970 I 0.000
GSMUA_Achr6G21080_001 Musa acuminata GSMUA_Achr6G21080_001 I 0.000
GSMUA_Achr8G28470_001 Musa acuminata GSMUA_Achr8G28470_001 I 0.000
VIT_05s0029g00130 Vitis vinifera VIT_05s0029g00130 I 0.000
TCM_020322 Theobroma cacao TCM_020322 I 0.000
Solyc09g091960.2 Solanum lycopersicum Solyc09g091960.2 I 0.000
PRUPE_ppa026976mg Prunus persica PRUPE_ppa026976mg I 0.000
POPTR_0001s32240 Populus trichocarpa POPTR_0001s32240 I 0.000
PGSC0003DMG400031288 Solanum tuberosum PGSC0003DMG400031288 I 0.000
MTR_7g005970 Medicago truncatula MTR_7g005970 I 0.000
MTR_1g116180 Medicago truncatula MTR_1g116180 I 0.000
AMTR_s00089p00097770 Amborella trichopoda AMTR_s00089p00097770 I 0.000
mgf005082m Mimulus guttatus mgf005082m N 0.000