CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_022706.2
(
Lotus japonicus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
LjSGA_022706.2
T230893_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN
NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.761
0.807
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.761
0.807
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.761
0.807
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.753
0.754
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.744
0.684
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.744
0.684
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.723
0.667
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.723
0.667
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN
NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.635
0.719
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN
NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.635
0.667
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT
AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.635
0.667
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.635
0.667
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.635
0.667
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.623
0.702
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.623
0.702
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.623
0.702
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.623
0.702
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.617
0.649
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN
NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.617
0.649
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.617
0.649
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG
CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.617
0.649
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN
NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.609
0.544
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.609
0.544
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.605
0.649
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.605
0.649
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_022706.2
Homeodomain
25
81
QEKKKRLTCEQLDSLESSFQQEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKT
Links
Other
Homeodomain
family TFs
Other
Lotus japonicus
TFs
600 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy