TF Information

XP_002164560.1 *(Hydra magnipapillata)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	XP_002164560.1	T231079_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MSX2 M00290_2.00	Homo sapiens	WDATNDNN	NNHNATHW	PBM Barrera et al.(2016) MSX2_REF	0.627	0.368
Msx2 M00414_2.00	Mus musculus	HRATKRNN	NNYMATYD	PBM Berger et al.(2008) Msx2_3449	0.627	0.368
Msx1 M00501_2.00	Mus musculus	NHDATND	HNATHDN	PBM Berger et al.(2008) Msx1_3031	0.627	0.368
Dr M00555_2.00	Drosophila melanogaster	TAATTRNN	NNYAATTA	PBM Busser et al.(2012a) Msh	0.627	0.368
MSX1 M03184_2.00	Homo sapiens	TAATTRBHHNHTAATTRN	NYAATTADNDDVYAATTA	SELEX Jolma et al.(2013) MSX1_1	0.627	0.368
MSX1 M03185_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) MSX1_2	0.627	0.368
MSX1 M03186_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) MSX1_3	0.627	0.368
MSX2 M03127_2.00	Homo sapiens	TAATTRBHWKWTAATTGV	BCAATTAWMWDVYAATTA	SELEX Jolma et al.(2013) MSX2_1	0.627	0.368
MSX2 M03128_2.00	Homo sapiens	NTAATTGB	VCAATTAN	SELEX Jolma et al.(2013) MSX2_2	0.627	0.368
MSX1 M05221_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) MSX1_eDBD_HT-SELEX	0.627	0.368
MSX1 M05224_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_FL_HT-SELEX	0.627	0.368
MSX2 M05060_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX2_eDBD_HT-SELEX	0.627	0.368
Dr M06482_2.00	Drosophila melanogaster	TAATTGS	SCAATTA	B1H Mathelier et al.(2014) MA0188.1	0.627	0.368
Dr M06229_2.00	Drosophila melanogaster	TAATTGSHB	VDSCAATTA	B1H Zhu et al.(2011) Dr_Cell_FBgn0000492	0.627	0.368
Dr M06230_2.00	Drosophila melanogaster	TAATTR	YAATTA	B1H Zhu et al.(2011) Dr_SOLEXA_FBgn0000492	0.627	0.368
MSX1 M10715_2.00	Homo sapiens	HNBTWWNTG	CANWWAVND	Transfac Matys et al.(2006) V$MSX1_01	0.627	0.368
MSX1 M10716_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX1_Q5_01	0.627	0.368
MSX1 M10717_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX1_Q5	0.627	0.368
MSX2 M10677_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX2_Q3	0.627	0.368
MSX2 M10678_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX2_Q6	0.627	0.368
MSX2 M00288_2.00	Homo sapiens	NTAATNDN	NHNATTAN	PBM Barrera et al.(2016) MSX2_P148H	0.627	0.368
MSX2 M00289_2.00	Homo sapiens	WDATWDNN	NNHWATHW	PBM Barrera et al.(2016) MSX2_R172H	0.627	0.368
MSX1 M05222_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_eDBD_Methyl-HT-SELEX_1	0.627	0.368
MSX1 M05223_2.00	Homo sapiens	NTWAYGMB	VKCRTWAN	SELEX Yin et al.(2017) MSX1_eDBD_Methyl-HT-SELEX_2	0.627	0.368
MSX1 M05225_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_FL_Methyl-HT-SELEX_1	0.627	0.368
MSX1 M05226_2.00	Homo sapiens	NTWAYGWB	VWCRTWAN	SELEX Yin et al.(2017) MSX1_FL_Methyl-HT-SELEX_2	0.627	0.368
MSX2 M05061_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX2_eDBD_Methyl-HT-SELEX_1	0.627	0.368
MSX2 M05062_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) MSX2_eDBD_Methyl-HT-SELEX_2	0.627	0.368
Msx3 M00429_2.00	Mus musculus	TAATKDNN	NNHMATTA	PBM Berger et al.(2008) Msx3_3206	0.626	0.351
Msx3 M03255_2.00	Mus musculus	TAATTGSHHNNTAATTRN	NYAATTANNDDSCAATTA	SELEX Jolma et al.(2013) Msx3_1	0.626	0.351
Msx3 M03256_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Msx3_2	0.626	0.351
Q0N4F9_NEMVE M02162_2.00	Nematostella vectensis	DTAATTAK	MTAATTAH	PBM Weirauch et al.(2014) pTH6150	0.613	0.474
Lhx3 M00435_2.00	Mus musculus	NNNYAATHW	WDATTRNNN	PBM Berger et al.(2008) Lhx3_3431	0.605	0.421
Lhx3 M02687_2.00	Mus musculus	VRWTAATTAATTW	WAATTAATTAWYB	SELEX Mathelier et al.(2014) MA0135.1	0.605	0.421
LHX3 M09137_2.00	Homo sapiens	NYTAATTAAWTHH	DDAWTTAATTARN	Misc Kulakovskiy et al.(2013) LHX3_HUMAN.H11MO.0.C	0.605	0.421
Lhx3 M09188_2.00	Mus musculus	NYTRATKRV	BYMATYARN	Misc Kulakovskiy et al.(2013) LHX3_MOUSE.H11MO.0.C	0.605	0.421
Lhx3 M09570_2.00	Mus musculus	NNBTAATTAV	BTAATTAVNN	Misc Heinz et al.(2010) Neuron-Lhx3_GSE31456	0.605	0.421
LHX3 M10657_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LHX3A_01	0.605	0.421
LHX3 M10658_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LHX3b_01	0.605	0.421
LHX3 M10659_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LHX3_Q3	0.605	0.421
Lhx4 M00430_2.00	Mus musculus	NYAATHN	NDATTRN	PBM Berger et al.(2008) Lhx4_1719	0.605	0.404
Lim3 M02116_2.00	Drosophila melanogaster	NNNNNATBRN	NYVATNNNNN	PBM Weirauch et al.(2014) pTH6478	0.605	0.404
Lhx4 M03257_2.00	Mus musculus	BTAATTRN	NYAATTAV	SELEX Jolma et al.(2013) Lhx4_1	0.605	0.404
Lim3 M03796_2.00	Drosophila melanogaster	BTAATTAV	BTAATTAV	SELEX Nitta et al.(2015) Lim3_1	0.605	0.404
LHX4 M05063_2.00	Homo sapiens	BYAATYRV	BYRATTRV	SELEX Yin et al.(2017) LHX4_eDBD_HT-SELEX	0.605	0.404
LHX4 M05066_2.00	Homo sapiens	BTAATTAN	NTAATTAV	SELEX Yin et al.(2017) LHX4_FL_HT-SELEX	0.605	0.404
Lim3 M06492_2.00	Drosophila melanogaster	HTAATKA	TMATTAD	B1H Mathelier et al.(2014) MA0195.1	0.605	0.404
Lim3 M06258_2.00	Drosophila melanogaster	HHTAATKA	TMATTADD	B1H Zhu et al.(2011) Lim3_Cell_FBgn0002023	0.605	0.404
Lim3 M06259_2.00	Drosophila melanogaster	HTRATTR	YAATYAD	B1H Zhu et al.(2011) Lim3_SOLEXA_FBgn0002023	0.605	0.404
LHX4 M05064_2.00	Homo sapiens	BYAATTRV	BYAATTRV	SELEX Yin et al.(2017) LHX4_eDBD_Methyl-HT-SELEX_1	0.605	0.404
LHX4 M05065_2.00	Homo sapiens	NTWAYGHN	NDCRTWAN	SELEX Yin et al.(2017) LHX4_eDBD_Methyl-HT-SELEX_2	0.605	0.404
LHX4 M05067_2.00	Homo sapiens	NYAATTRN	NYAATTRN	SELEX Yin et al.(2017) LHX4_FL_Methyl-HT-SELEX_1	0.605	0.404
LHX4 M05068_2.00	Homo sapiens	NTAAYGHN	NDCRTTAN	SELEX Yin et al.(2017) LHX4_FL_Methyl-HT-SELEX_2	0.605	0.404
ceh-62 M02187_2.00	Caenorhabditis elegans	NNYAATTRNN	NNYAATTRNN	PBM Weirauch et al.(2014) pTH5492	0.603	0.386
LBX1 M02090_2.00	Homo sapiens	NTAAYTRG	CYARTTAN	PBM Weirauch et al.(2014) pTH6404	0.601	0.386
lbl M00561_2.00	Drosophila melanogaster	NTAAYDRGN	NCYHRTTAN	PBM Busser et al.(2012a) Lbl	0.601	0.386
lbe M03822_2.00	Drosophila melanogaster	TAACRABV	BVTYGTTA	SELEX Nitta et al.(2015) lbe_1	0.601	0.386
lbe M03823_2.00	Drosophila melanogaster	BTVAKBRV	BYVMTBAV	SELEX Nitta et al.(2015) lbe_2	0.601	0.386
lbe M03824_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) lbe_3	0.601	0.386
lbe M03825_2.00	Drosophila melanogaster	TAAYRAKN	NMTYRTTA	SELEX Nitta et al.(2015) lbe_4	0.601	0.386
lbl M03815_2.00	Drosophila melanogaster	NTAAYKRG	CYMRTTAN	SELEX Nitta et al.(2015) lbl_1	0.601	0.386
lbl M03816_2.00	Drosophila melanogaster	NTAAYRAGN	NCTYRTTAN	SELEX Nitta et al.(2015) lbl_2	0.601	0.386
lbl M06508_2.00	Drosophila melanogaster	TAATKR	YMATTA	B1H Mathelier et al.(2014) MA0232.1	0.601	0.386
lbe M06510_2.00	Drosophila melanogaster	TAAYNA	TNRTTA	B1H Mathelier et al.(2014) MA0231.1	0.601	0.386
lbe M06299_2.00	Drosophila melanogaster	NHTAAYNA	TNRTTADN	B1H Zhu et al.(2011) Lbe_Cell_FBgn0011278	0.601	0.386
lbe M06300_2.00	Drosophila melanogaster	YTAAYBA	TVRTTAR	B1H Zhu et al.(2011) Lbe_SOLEXA_FBgn0011278	0.601	0.386
lbl M06295_2.00	Drosophila melanogaster	VHTAATKR	YMATTADB	B1H Zhu et al.(2011) Lbl_Cell_FBgn0008651	0.601	0.386
lbl M06296_2.00	Drosophila melanogaster	NHTAAYBA	TVRTTADN	B1H Zhu et al.(2011) Lbl_SOLEXA_FBgn0008651	0.601	0.386
Smp_158000 M02170_2.00	Schistosoma mansoni	TTAATTRG	CYAATTAA	PBM Weirauch et al.(2014) pTH5672	0.601	0.368
NEMVEDRAFT_v1g164989 M02148_2.00	Nematostella vectensis	YTAATTAG	CTAATTAR	PBM Weirauch et al.(2014) pTH5994	0.601	0.351
Gbx2 M00462_2.00	Mus musculus	NNDAHNN	NNDTHNN	PBM Berger et al.(2008) Gbx2_3110	0.600	0.368
Gbx1 M00525_2.00	Mus musculus	NNTAATNR	YNATTANN	PBM Berger et al.(2008) Gbx1_2883	0.600	0.368
GBX1 M03193_2.00	Homo sapiens	NBTAATTRSB	VSYAATTAVN	SELEX Jolma et al.(2013) GBX1_1	0.600	0.368
GBX2 M03201_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) GBX2_1	0.600	0.368
GBX2 M03202_2.00	Homo sapiens	TAATTRVBCAATWA	TWATTGVBYAATTA	SELEX Jolma et al.(2013) GBX2_2	0.600	0.368
GBX2 M03203_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) GBX2_3	0.600	0.368
Gbx1 M03286_2.00	Mus musculus	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) Gbx1_1	0.600	0.368
Gbx2 M03268_2.00	Mus musculus	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) Gbx2_1	0.600	0.368
unpg M03836_2.00	Drosophila melanogaster	SSTAATYRVN	NBYRATTASS	SELEX Nitta et al.(2015) unpg_1	0.600	0.368
GBX2 M05265_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_eDBD_HT-SELEX	0.600	0.368
GBX2 M05268_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) GBX2_FL_HT-SELEX	0.600	0.368
unpg M06517_2.00	Drosophila melanogaster	BTAATTR	YAATTAV	B1H Mathelier et al.(2014) MA0251.1	0.600	0.368
unpg M06311_2.00	Drosophila melanogaster	NBTAATTR	YAATTAVN	B1H Zhu et al.(2011) Unpg_Cell_FBgn0015561	0.600	0.368
unpg M06312_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Unpg_SOLEXA_FBgn0015561	0.600	0.368
GBX2 M05266_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) GBX2_eDBD_Methyl-HT-SELEX_1	0.600	0.368
GBX2 M05267_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_eDBD_Methyl-HT-SELEX_2	0.600	0.368
GBX2 M05269_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_FL_Methyl-HT-SELEX_1	0.600	0.368
GBX2 M05270_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) GBX2_FL_Methyl-HT-SELEX_2	0.600	0.368
For this family, TFs with SR scores > 0.599* will likely have a similar motif*