CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BGLB003173
(
Biomphalaria glabrata
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
BGLB003173
T232405_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PBX3
M08132_2.00
Homo sapiens
NNNTGAGTGACAGSNNN
NNNSCTGTCACTCANNN
ChIP-seq
Mathelier et al.(2014)
MA1114.1
0.600
0.510
PBX3
M07971_2.00
Homo sapiens
NNBDRCCAATSRVVD
HBBYSATTGGYHVNN
ChIP-seq
Gerstein et al.(2012)
GM12878_PBX3_HudsonAlpha
0.600
0.510
PBX3
M09155_2.00
Homo sapiens
DGABKGRCRGB
VCYGYCMVTCH
Misc
Kulakovskiy et al.(2013)
PBX3_HUMAN.H11MO.0.A
0.600
0.510
PBX3
M09560_2.00
Homo sapiens
NTGABTGACAGB
VCTGTCAVTCAN
Misc
Heinz et al.(2010)
GM12878-PBX3_GSE32465
0.600
0.510
PBX3
M10732_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_02
0.600
0.510
PBX3
M10733_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_03
0.600
0.510
PBX3
M10734_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_04
0.600
0.510
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGLB003173-PA
Homeodomain
85
130
RRKRRNFTKNATEILTEYFYSHLSNPYPSEEVKEELARKCGISVSQ
BGLB003173-PA
Homeodomain
128
187
VSQRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGINVSQVSNWFGNKRIRYKK
Links
Other
Homeodomain
family TFs
Other
Biomphalaria glabrata
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy