CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
CGOC_0001018301
(
Cylicostephanus goldi
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
CGOC_0001018301
T233328_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
si:dkey-43p13.5
M02082_2.00
Danio rerio
DNWNWWNWNH
DNWNWWNWNH
PBM
Weirauch et al.(2014)
pTH6636
0.676
0.456
Nkx3-2
M00506_2.00
Mus musculus
NNRAGDRNN
NNYHCTYNN
PBM
Berger et al.(2008)
Bapx1_2343
0.604
0.474
NKX3-2
M05012_2.00
Homo sapiens
NNTAAGTGSN
NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX
0.604
0.474
NKX3-2
M09138_2.00
Homo sapiens
TTAAGTGBNH
DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C
0.604
0.474
Nkx3-2
M09212_2.00
Mus musculus
TTAAGTGBNH
DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B
0.604
0.474
NKX3-2
M10663_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX32_01
0.604
0.474
NKX3-2
M05013_2.00
Homo sapiens
NNTAAGTGBN
NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1
0.604
0.474
NKX3-2
M05014_2.00
Homo sapiens
NTAACGHB
VDCGTTAN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2
0.604
0.474
bap
M00560_2.00
Drosophila melanogaster
NDAAGTRBNN
NNVYACTTHN
PBM
Busser et al.(2012a)
Bap
0.600
0.439
bap
M02119_2.00
Drosophila melanogaster
NYTAAGTRSNN
NNSYACTTARN
PBM
Weirauch et al.(2014)
pTH5945
0.600
0.439
bap
M03812_2.00
Drosophila melanogaster
NNTAAGTGBN
NVCACTTANN
SELEX
Nitta et al.(2015)
bap_1
0.600
0.439
bap
M06504_2.00
Drosophila melanogaster
TTAAGTR
YACTTAA
B1H
Mathelier et al.(2014)
MA0211.1
0.600
0.439
bap
M06287_2.00
Drosophila melanogaster
NBTTAAGTRN
NYACTTAAVN
B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862
0.600
0.439
bap
M06288_2.00
Drosophila melanogaster
NYTAAKTR
YAMTTARN
B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862
0.600
0.439
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CGOC_0001018301-mRNA-1
Homeodomain
30
87
AEKRAAHSQNQLSGWLFQEYLSEHYMIRDKRAQLAESLGLSEAQVKTWFQNRRAKDKR
Links
Other
Homeodomain
family TFs
Other
Cylicostephanus goldi
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy