CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MCOS_0000719101
(
Mesocestoides corti
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
MCOS_0000719101
T235094_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Lhx4
M00430_2.00
Mus musculus
NYAATHN
NDATTRN
PBM
Berger et al.(2008)
Lhx4_1719
0.686
0.796
Lhx3
M00435_2.00
Mus musculus
NNNYAATHW
WDATTRNNN
PBM
Berger et al.(2008)
Lhx3_3431
0.686
0.796
Lhx4
M03257_2.00
Mus musculus
BTAATTRN
NYAATTAV
SELEX
Jolma et al.(2013)
Lhx4_1
0.686
0.796
LHX4
M05063_2.00
Homo sapiens
BYAATYRV
BYRATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_HT-SELEX
0.686
0.796
LHX4
M05066_2.00
Homo sapiens
BTAATTAN
NTAATTAV
SELEX
Yin et al.(2017)
LHX4_FL_HT-SELEX
0.686
0.796
Lhx3
M02687_2.00
Mus musculus
VRWTAATTAATTW
WAATTAATTAWYB
SELEX
Mathelier et al.(2014)
MA0135.1
0.686
0.796
LHX3
M09137_2.00
Homo sapiens
NYTAATTAAWTHH
DDAWTTAATTARN
Misc
Kulakovskiy et al.(2013)
LHX3_HUMAN.H11MO.0.C
0.686
0.796
Lhx3
M09188_2.00
Mus musculus
NYTRATKRV
BYMATYARN
Misc
Kulakovskiy et al.(2013)
LHX3_MOUSE.H11MO.0.C
0.686
0.796
Lhx3
M09570_2.00
Mus musculus
NNBTAATTAV
BTAATTAVNN
Misc
Heinz et al.(2010)
Neuron-Lhx3_GSE31456
0.686
0.796
LHX3
M10657_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3A_01
0.686
0.796
LHX3
M10658_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3b_01
0.686
0.796
LHX3
M10659_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3_Q3
0.686
0.796
LHX4
M05064_2.00
Homo sapiens
BYAATTRV
BYAATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_1
0.686
0.796
LHX4
M05065_2.00
Homo sapiens
NTWAYGHN
NDCRTWAN
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_2
0.686
0.796
LHX4
M05067_2.00
Homo sapiens
NYAATTRN
NYAATTRN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_1
0.686
0.796
LHX4
M05068_2.00
Homo sapiens
NTAAYGHN
NDCRTTAN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_2
0.686
0.796
Lim3
M02116_2.00
Drosophila melanogaster
NNNNNATBRN
NYVATNNNNN
PBM
Weirauch et al.(2014)
pTH6478
0.674
0.778
Lim3
M03796_2.00
Drosophila melanogaster
BTAATTAV
BTAATTAV
SELEX
Nitta et al.(2015)
Lim3_1
0.674
0.778
Lim3
M06492_2.00
Drosophila melanogaster
HTAATKA
TMATTAD
B1H
Mathelier et al.(2014)
MA0195.1
0.674
0.778
Lim3
M06258_2.00
Drosophila melanogaster
HHTAATKA
TMATTADD
B1H
Zhu et al.(2011)
Lim3_Cell_FBgn0002023
0.674
0.778
Lim3
M06259_2.00
Drosophila melanogaster
HTRATTR
YAATYAD
B1H
Zhu et al.(2011)
Lim3_SOLEXA_FBgn0002023
0.674
0.778
C4B866_NEMVE
M02052_2.00
Nematostella vectensis
NNTTAATTARNN
NNYTAATTAANN
PBM
Weirauch et al.(2014)
pTH6176
0.644
0.574
ZFHX2
M02089_2.00
Homo sapiens
NNTRATYANN
NNTRATYANN
PBM
Weirauch et al.(2014)
pTH5642
0.618
0.500
Lhx1
M00405_2.00
Mus musculus
TRATDRNNN
NNNYHATYA
PBM
Berger et al.(2008)
Lhx1_2240
0.613
0.685
Lhx5
M00445_2.00
Mus musculus
TAATKRNNN
NNNYMATTA
PBM
Berger et al.(2008)
Lhx5_2279
0.613
0.685
LHX1
M05410_2.00
Homo sapiens
NTRATBRN
NYVATYAN
SELEX
Yin et al.(2017)
LHX1_eDBD_HT-SELEX
0.613
0.685
LHX5
M04936_2.00
Homo sapiens
NTAATTRS
SYAATTAN
SELEX
Yin et al.(2017)
LHX5_FL_HT-SELEX
0.613
0.685
LHX1
M05411_2.00
Homo sapiens
NHRAYGHN
NDCRTYDN
SELEX
Yin et al.(2017)
LHX1_eDBD_Methyl-HT-SELEX
0.613
0.685
LHX5
M04937_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_1
0.613
0.685
LHX5
M04938_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_2
0.613
0.685
Lim1
M03853_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
Lim1_1
0.602
0.648
Lim1
M06529_2.00
Drosophila melanogaster
TTAATTA
TAATTAA
B1H
Mathelier et al.(2014)
MA0194.1
0.602
0.648
Lim1
M06332_2.00
Drosophila melanogaster
TTAATTA
TAATTAA
B1H
Zhu et al.(2011)
Lim1_Cell_FBgn0026411
0.602
0.648
Lim1
M06333_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
Lim1_SOLEXA_FBgn0026411
0.602
0.648
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MCOS_0000719101-mRNA-1
Homeodomain
159
212
KRPRTTITAKQLEALKKAYAEGAKPSRHVREQLSAETGLEMRVVQVWFQNRRGT
Links
Other
Homeodomain
family TFs
Other
Mesocestoides corti
TFs
507 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy