RSKR_0000979300 (Rhabditophanes kr3021)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 RSKR_0000979300 T235872_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nkx3-1
M00170_2.00
Mus musculus
NDAAGTRBNN

NNVYACTTHN
PBM
Badis et al.(2009)
Nkx3-1_2923
0.603 0.509
Nkx3-1
M00420_2.00
Mus musculus
NNAAGTRBNN

NNVYACTTNN
PBM
Berger et al.(2008)
Nkx3-1_2923
0.603 0.509
NKX3-1
M05255_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX
0.603 0.509
NKX3-1
M09154_2.00
Homo sapiens
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C
0.603 0.509
Nkx3-1
M09184_2.00
Mus musculus
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C
0.603 0.509
NKX3-1
M09559_2.00
Homo sapiens
BTRAGTRBYY

RRVYACTYAV
Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264
0.603 0.509
NKX3-1
M10729_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_01
0.603 0.509
NKX3-1
M10730_2.00
Homo sapiens
NWWTAAGTATWH

DWATACTTAWWN
Transfac
Matys et al.(2006)
V$NKX3A_01
0.603 0.509
NKX3-1
M10731_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX3A_Q3
0.603 0.509
NKX3-1
M05256_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1
0.603 0.509
NKX3-1
M05257_2.00
Homo sapiens
NTAAYSWB

VWSRTTAN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2
0.603 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000979300.1 Homeodomain 139 195

Links

Other Homeodomain family TFs
Other Rhabditophanes kr3021 TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL006595 Aedes aegypti AAEL006595 I 0.706
AAEL013760 Aedes aegypti AAEL013760 I 0.676
AARA000173 Anopheles arabiensis AARA000173 I 0.676
AARA010122 Anopheles arabiensis AARA010122 I 0.706
AATE000358 Anopheles atroparvus AATE000358 I 0.706
AATE013060 Anopheles atroparvus AATE013060 I 0.676
ACHR005763 Anopheles christyi ACHR005763 I 0.676
ACOM028768 Anopheles coluzzii ACOM028768 I 0.706
ACOM038092 Anopheles coluzzii ACOM038092 I 0.676
ACUA001933 Anopheles culicifacies ACUA001933 I 0.676
ACUA002309 Anopheles culicifacies ACUA002309 I 0.706
ACYPI20510 Acyrthosiphon pisum ACYPI20510 N 0.613
ADAC007060 Anopheles darlingi ADAC007060 I 0.706
ADIR002054 Anopheles dirus ADIR002054 I 0.676
ADIR005346 Anopheles dirus ADIR005346 I 0.706
AEPI001330 Anopheles epiroticus AEPI001330 I 0.676
AEPI001628 Anopheles epiroticus AEPI001628 I 0.706
AFAF013735 Anopheles farauti AFAF013735 I 0.676
AFUN008965 Anopheles funestus AFUN008965 I 0.706
AFUN011052 Anopheles funestus AFUN011052 I 0.676
AGAP003670 Anopheles gambiae AGAP003670 I 0.706
AGAP011253 Anopheles gambiae AGAP011253 I 0.676
AMAM006930 Anopheles maculatus AMAM006930 I 0.676
AMAM013972 Anopheles maculatus AMAM013972 I 0.706
AMEC014432 Anopheles melas AMEC014432 I 0.676
AMEC022225 Anopheles melas AMEC022225 I 0.706
AMIN004030 Anopheles minimus AMIN004030 I 0.706
AMIN008343 Anopheles minimus AMIN008343 I 0.676
AQUA000022 Anopheles quadriannulatus AQUA000022 I 0.676
AQUA001539 Anopheles quadriannulatus AQUA001539 I 0.706
ASIM_0001224701 Anisakis simplex ASIM_0001224701 I 0.628
ASIS004744 Anopheles sinensis ASIS004744 I 0.706
ASIS013064 Anopheles sinensis ASIS013064 I 0.676
ASTEI06766 Anopheles stephensi ASTEI06766 I 0.676
ASTEI07436 Anopheles stephensi ASTEI07436 I 0.706
BGIBMGA010704 Bombyx mori BGIBMGA010704 I 0.711
CapteG40416 Capitella teleta CapteG40416 I 0.681
CBN18011 Caenorhabditis brenneri CBN18011 I 0.606
CJA11788 Caenorhabditis japonica CJA11788 I 0.633
CPIJ004108 Culex quinquefasciatus CPIJ004108 I 0.706
CPIJ007576 Culex quinquefasciatus CPIJ007576 I 0.676
CpipJ_CPIJ004108 Culex pipiens CpipJ_CPIJ004108 I 0.706
CpipJ_CPIJ007576 Culex pipiens CpipJ_CPIJ007576 I 0.676
CRE11320 Caenorhabditis remanei CRE11320 N 0.671
csin101526 Clonorchis sinensis csin101526 I 0.658
D918_06873 Trichuris suis D918_06873 I 0.611
D918_09349 Trichuris suis D918_09349 I 0.674
ECANG7_07702 Echinococcus canadensis ECANG7_07702 I 0.675
ECANG7_09053 Echinococcus canadensis ECANG7_09053 I 0.694
EmuJ_000522100 Echinococcus multilocularis EmuJ_000522100 I 0.683
EmuJ_000533000 Echinococcus multilocularis EmuJ_000533000 I 0.675
EmuJ_000733700 Echinococcus multilocularis EmuJ_000733700 I 0.665
ENSACAG00000026683 Anolis carolinensis ENSACAG00000026683 I 0.603
ENSAMEG00000002866 Ailuropoda melanoleuca ENSAMEG00000002866 I 0.603
ENSAMXG00000024837 Astyanax mexicanus ENSAMXG00000024837 I 0.603
ENSAPLG00000014690 Anas platyrhynchos ENSAPLG00000014690 I 0.605
NKX3-1 Bos taurus ENSBTAG00000001221 I 0.603
ENSBTAP00000001615-D1 Bos grunniens ENSBTAP00000001615-D1 I 0.603
ENSCAFG00000009107 Canis familiaris ENSCAFG00000009107 I 0.603
NKX2-6 Canis familiaris ENSCAFG00000024691 I 0.603
ENSCHOG00000011132 Choloepus hoffmanni ENSCHOG00000011132 I 0.603
NKX3-1 Callithrix jacchus ENSCJAG00000020092 I 0.603
ENSCPOG00000010557 Cavia porcellus ENSCPOG00000010557 I 0.603
ENSCSAG00000016229 Chlorocebus sabaeus ENSCSAG00000016229 I 0.603
nkx2.2b Danio rerio ENSDARG00000101549 I 0.685
NKX3-1 Dasypus novemcinctus ENSDNOG00000044451 I 0.603
ENSECAG00000001509 Equus caballus ENSECAG00000001509 I 0.603
NKX3-1 Erinaceus europaeus ENSEEUG00000001113 I 0.603
NKX3-1 Echinops telfairi ENSETEG00000018790 I 0.603
ENSFALG00000011121 Ficedula albicollis ENSFALG00000011121 I 0.605
NKX3-1 Homo sapiens ENSG00000167034 D 0.603
nkx3-1 Gasterosteus aculeatus ENSGACG00000010776 I 0.603
NKX3-1 Gorilla gorilla ENSGGOG00000014369 I 0.603
ENSGMOG00000005518 Gadus morhua ENSGMOG00000005518 I 0.603
NKX3-1 Loxodonta africana ENSLAFG00000008941 I 0.603
ENSLOCG00000015015 Lepisosteus oculatus ENSLOCG00000015015 I 0.603
NKX3-1 Microcebus murinus ENSMICG00000011189 I 0.603
NKX3-1 Myotis lucifugus ENSMLUG00000006118 I 0.603
NKX3-1 Macaca mulatta ENSMMUG00000009796 I 0.603
NKX3-1 Monodelphis domestica ENSMODG00000016789 I 0.603
ENSMPUG00000003418 Mustela putorius furo ENSMPUG00000003418 I 0.603
Nkx3-1 Mus musculus ENSMUSG00000022061 D 0.603
ENSNLEG00000015968 Nomascus leucogenys ENSNLEG00000015968 I 0.603
NKX3-1 Ornithorhynchus anatinus ENSOANG00000008027 I 0.603
ENSOARG00000010071 Ovis aries ENSOARG00000010071 I 0.603
NKX3-1 Oryctolagus cuniculus ENSOCUG00000004294 I 0.603
NKX3-1 Otolemur garnettii ENSOGAG00000001303 I 0.603
ENSONIG00000011762 Oreochromis niloticus ENSONIG00000011762 I 0.603
NKX3-1 Ochotona princeps ENSOPRG00000003179 I 0.603
nkx3-1 Oryzias latipes ENSORLG00000010925 I 0.603
ENSP00000370253 Macaca fascicularis ENSP00000370253 I 0.603
ENSPANG00000004934 Papio anubis ENSPANG00000004934 I 0.603
ENSPCAG00000016644 Procavia capensis ENSPCAG00000016644 I 0.603
ENSPFOG00000009654 Poecilia formosa ENSPFOG00000009654 I 0.603
ENSPPYG00000018442 Pongo abelii ENSPPYG00000018442 I 0.603
ENSPSIG00000017342 Pelodiscus sinensis ENSPSIG00000017342 I 0.603
NKX3-1 Pan troglodytes ENSPTRG00000020081 I 0.603
NKX3-1 Pteropus vampyrus ENSPVAG00000005378 I 0.603
Nkx3-1 Rattus norvegicus ENSRNOG00000015477 I 0.603
ENSSARG00000001895 Sorex araneus ENSSARG00000001895 I 0.603
ENSSHAG00000015475 Sarcophilus harrisii ENSSHAG00000015475 I 0.603
ENSSSCG00000028216 Sus scrofa ENSSSCG00000028216 I 0.603
ENSTBEG00000002319 Tupaia belangeri ENSTBEG00000002319 I 0.603
ENSTSYG00000007109 Tarsius syrichta ENSTSYG00000007109 I 0.603
ENSTTRG00000012332 Tursiops truncatus ENSTTRG00000012332 I 0.603
NKX3-1 Vicugna pacos ENSVPAG00000004503 I 0.603
ENSXMAG00000020262 Xiphophorus maculatus ENSXMAG00000020262 I 0.603
HDID_0000431201 Hymenolepis diminuta HDID_0000431201 N 0.703
HDID_0000863701 Hymenolepis diminuta HDID_0000863701 I 0.665
HelroG109698 Helobdella robusta HelroG109698 I 0.681
HelroG127610 Helobdella robusta HelroG127610 N 0.679
HelroG138724 Helobdella robusta HelroG138724 I 0.609
HelroG148517 Helobdella robusta HelroG148517 N 0.696
HelroG148581 Helobdella robusta HelroG148581 I 0.691
HelroG148584 Helobdella robusta HelroG148584 I 0.679
HelroG148616 Helobdella robusta HelroG148616 I 0.600
HelroG74887 Helobdella robusta HelroG74887 I 0.686
HelroG82552 Helobdella robusta HelroG82552 I 0.680
HMEL006180 Heliconius melpomene HMEL006180 I 0.706
HmN_000028800 Hymenolepis microstoma HmN_000028800 I 0.724
HNAJ_0000474501 Hymenolepis nana HNAJ_0000474501 I 0.665
HNAJ_0001184001 Hymenolepis nana HNAJ_0001184001 I 0.724
KGM_11243 Danaus plexippus KGM_11243 I 0.711
LOAG_15141 Loa loa LOAG_15141 I 0.675
maker-nMf.1.1.scaf01203-snap-gene-0.7 Meloidogyne floridensis maker-nMf.1.1.scaf01203-snap-gene-0.7 I 0.719
MCINX004874 Melitaea cinxia MCINX004874 I 0.706
MCOS_0000203501 Mesocestoides corti MCOS_0000203501 I 0.665
Minc14337 Meloidogyne incognita Minc14337 I 0.719
Myotis_brandtii_NKX3_10014306 Myotis brandtii Myotis_brandtii_NKX3_10014306 I 0.603
nAv.1.0.1.g02987 Acanthocheilonema viteae nAv.1.0.1.g02987 I 0.706
nAv.1.0.1.g03500 Acanthocheilonema viteae nAv.1.0.1.g03500 I 0.706
nAv.1.0.1.g04155 Acanthocheilonema viteae nAv.1.0.1.g04155 I 0.706
nAv.1.0.1.g09237 Acanthocheilonema viteae nAv.1.0.1.g09237 I 0.706
NEMVEDRAFT_v1g127828 Nematostella vectensis NEMVEDRAFT_v1g127828 I 0.674
NEMVEDRAFT_v1g192469 Nematostella vectensis NEMVEDRAFT_v1g192469 I 0.712
NEMVEDRAFT_v1g48313 Nematostella vectensis NEMVEDRAFT_v1g48313 I 0.669
NEMVEDRAFT_v1g68616 Nematostella vectensis NEMVEDRAFT_v1g68616 I 0.699
PHUM439860 Pediculus humanus PHUM439860 I 0.686
RPRC006183 Rhodnius prolixus RPRC006183 I 0.692
RSKR_0000483200 Rhabditophanes kr3021 RSKR_0000483200 N 0.631
Sjc_0067990 Schistosoma japonicum Sjc_0067990 I 0.669
SMAR005028 Strigamia maritima SMAR005028 I 0.686
Smp_186930 Schistosoma mansoni Smp_186930 I 0.671
SMRZ_0001509601 Schistosoma margrebowiei SMRZ_0001509601 I 0.671
SMU15001231 Schmidtea mediterranea SMU15001231 I 0.681
SMU15025601 Schmidtea mediterranea SMU15025601 N 0.613
SMU15028449 Schmidtea mediterranea SMU15028449 I 0.758
SMU15038697 Schmidtea mediterranea SMU15038697 I 0.726
SROB_0000484201 Schistosoma rodhaini SROB_0000484201 I 0.671
TASK_0000302501 Taenia asiatica TASK_0000302501 N 0.664
TASK_0000502501 Taenia asiatica TASK_0000502501 I 0.665
TASK_0000819601 Taenia asiatica TASK_0000819601 I 0.678
TCLT_0000230101 Thelazia callipaeda TCLT_0000230101 I 0.675
TCLT_0000478201 Thelazia callipaeda TCLT_0000478201 I 0.600
TMUE_s0171001300 Trichuris muris TMUE_s0171001300 I 0.674
TRE_0000257401 Trichobilharzia regenti TRE_0000257401 I 0.669
TriadG9507 Trichoplax adhaerens TriadG9507 I 0.721
TriadG9531 Trichoplax adhaerens TriadG9531 N 0.731
TriadG9561 Trichoplax adhaerens TriadG9561 I 0.712
TsM_000305000 Taenia solium TsM_000305000 N 0.663
TsM_000311100 Taenia solium TsM_000311100 I 0.665
TsM_001133000 Taenia solium TsM_001133000 I 0.678
TsM_001226400 Taenia solium TsM_001226400 N 0.670
TsM_001238800 Taenia solium TsM_001238800 I 0.670
TTAC_0000148901 Hydatigera taeniaeformis TTAC_0000148901 I 0.676
TTAC_0000848101 Hydatigera taeniaeformis TTAC_0000848101 I 0.665
TTRE_0000463801 Trichuris trichiura TTRE_0000463801 I 0.611
nkx3-1.L Xenopus laevis XB-GENE-479031 I 0.603
nkx3-1.S Xenopus laevis XB-GENE-6252708 I 0.603
XP_002156512.1 Hydra magnipapillata XP_002156512.1 I 0.759
XP_002932598 Xenopus tropicalis XP_002932598 I 0.603