CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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DAPPUDRAFT_45999
(
Daphnia pulex
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
DAPPUDRAFT_45999
T237256_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
prd
M03894_2.00
Drosophila melanogaster
VATTVGTCACGS
SCGTGACBAATB
SELEX
Nitta et al.(2015)
prd_1
0.786
0.786
prd
M03895_2.00
Drosophila melanogaster
NRATCRATYN
NRATYGATYN
SELEX
Nitta et al.(2015)
prd_2
0.786
0.786
prd
M06555_2.00
Drosophila melanogaster
HSWAACNGH
DCNGTTWSD
B1H
Mathelier et al.(2014)
MA0239.1
0.786
0.786
prd
M09684_2.00
Drosophila melanogaster
HMVNTHHKWMACGS
SCGTKWMDDANBKD
Misc
Kulakovskiy et al.(2009)
prd
0.786
0.786
prd
M10818_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$PRD_Q6
0.786
0.786
gsb-n
M03888_2.00
Drosophila melanogaster
SCGTRWCKAATB
VATTMGWYACGS
SELEX
Nitta et al.(2015)
gsb-n_1
0.775
0.775
Pax7
M00541_2.00
Mus musculus
NNVATTWN
NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.769
0.769
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA
TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.769
0.769
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA
TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.769
0.769
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR
YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.769
0.769
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN
NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.769
0.769
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.769
0.769
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN
NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.769
0.769
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.769
0.769
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.769
0.769
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN
NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.769
0.769
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN
NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.769
0.769
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA
TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.769
0.769
Pax7
M09588_2.00
Mus musculus
TAATTGATTW
WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.769
0.769
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN
NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.769
0.769
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN
NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.769
0.769
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.769
0.769
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN
NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.769
0.769
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.769
0.769
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.769
0.769
PAX3
M00358_2.00
Homo sapiens
NRTNNNN
NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.747
0.747
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA
TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.747
0.747
gsb
M03889_2.00
Drosophila melanogaster
RATTMGTCACGSN
NSCGTGACKAATY
SELEX
Nitta et al.(2015)
gsb_1
0.747
0.747
gsb
M03890_2.00
Drosophila melanogaster
NNNAATCRATTWNN
NNWAATYGATTNNN
SELEX
Nitta et al.(2015)
gsb_2
0.747
0.747
gsb
M03891_2.00
Drosophila melanogaster
RTBDMTAATTGATTD
HAATCAATTAKHVAY
SELEX
Nitta et al.(2015)
gsb_3
0.747
0.747
gsb
M03892_2.00
Drosophila melanogaster
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
gsb_4
0.747
0.747
gsb
M03893_2.00
Drosophila melanogaster
NSCGTGACKAATBV
BVATTMGTCACGSN
SELEX
Nitta et al.(2015)
gsb_5
0.747
0.747
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.747
0.747
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST
ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.747
0.747
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN
NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.747
0.747
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN
NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.747
0.747
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN
NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.747
0.747
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN
NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.747
0.747
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM
KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.747
0.747
PAX3
M10817_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.747
0.747
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN
NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.747
0.747
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN
NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.747
0.747
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN
NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.747
0.747
PAX3
M00352_2.00
Homo sapiens
VNTAATYR
YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.742
0.742
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN
NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.742
0.742
PAX3
M00354_2.00
Homo sapiens
NNNRYNN
NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.742
0.742
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.742
0.742
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN
NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.742
0.742
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.742
0.742
PAX3
M00359_2.00
Homo sapiens
NTAATYRV
BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.742
0.742
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFX85406
Paired box
21
146
GQGRVNQLGGVFINGRPLPNHIRLKIVELAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRAGVLGGTRPKPSLHPDIQRRVQAYRMENPGIFSWEVRDRLIKDGLCDRSTAPSVSAISRLMK
EFX85406
Homeodomain
185
241
RRHRTTFTAQQMDELEKAFDRTQYPDVYTREELAQRTKLTEARIQVWFSNRRARLRK
Links
Other
Homeodomain,Paired box
family TFs
Other
Daphnia pulex
TFs
234 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy