CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

PAX3 *(Cavia porcellus)* Homeodomain,Paired box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox) PF00292 (PAX)	IPR001356 IPR001523	ENSCPOG00000006276	T237295_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PAX3 M00358_2.00	Homo sapiens	NRTNNNN	NNNNAYN	PBM Barrera et al.(2016) PAX3_REF	1.000	1.000
PAX3 M03297_2.00	Homo sapiens	TAATYRATTA	TAATYRATTA	SELEX Jolma et al.(2013) PAX3_1	1.000	1.000
PAX3 M03885_2.00	Homo sapiens	NNTAATYGATTANN	NNTAATCRATTANN	SELEX Nitta et al.(2015) PAX3_1	1.000	1.000
PAX3 M03886_2.00	Homo sapiens	RATTMGTCACGST	ASCGTGACKAATY	SELEX Nitta et al.(2015) PAX3_2	1.000	1.000
PAX3 M05438_2.00	Homo sapiens	NSGTCACGSHHATTAN	NTAATDDSCGTGACSN	SELEX Yin et al.(2017) PAX3_eDBD_HT-SELEX_1	1.000	1.000
PAX3 M05439_2.00	Homo sapiens	NDAATCRATTMN	NKAATYGATTHN	SELEX Yin et al.(2017) PAX3_eDBD_HT-SELEX_2	1.000	1.000
PAX3 M05440_2.00	Homo sapiens	NBRATTMGTCACGSHN	NDSCGTGACKAATYVN	SELEX Yin et al.(2017) PAX3_eDBD_HT-SELEX_3	1.000	1.000
PAX3 M09585_2.00	Homo sapiens	WSYRTGACWAATBNN	NNVATTWGTCAYRSW	Misc Heinz et al.(2010) Rh4-PAX3_FKHR_GSE19063	1.000	1.000
PAX3 M10816_2.00	Homo sapiens	TCGTCACRCHYHM	KDRDGYGTGACGA	Transfac Matys et al.(2006) V$PAX3_01	1.000	1.000
PAX3 M10817_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX3_B	1.000	1.000
PAX3 M05441_2.00	Homo sapiens	NNGTCACGSHWRTTAN	NTAAYWDSCGTGACNN	SELEX Yin et al.(2017) PAX3_eDBD_Methyl-HT-SELEX_1	1.000	1.000
PAX3 M05442_2.00	Homo sapiens	NWAATCRATTAN	NTAATYGATTWN	SELEX Yin et al.(2017) PAX3_eDBD_Methyl-HT-SELEX_2	1.000	1.000
PAX3 M05443_2.00	Homo sapiens	NNRATTVGTCRCGSHN	NDSCGYGACBAATYNN	SELEX Yin et al.(2017) PAX3_eDBD_Methyl-HT-SELEX_3	1.000	1.000
PAX3 M00352_2.00	Homo sapiens	VNTAATYR	YRATTANB	PBM Barrera et al.(2016) PAX3_G48R	0.995	0.995
PAX3 M00353_2.00	Homo sapiens	NNNNRTNNN	NNNAYNNNN	PBM Barrera et al.(2016) PAX3_N47H	0.995	0.995
PAX3 M00354_2.00	Homo sapiens	NNNRYNN	NNRYNNN	PBM Barrera et al.(2016) PAX3_N47K	0.995	0.995
PAX3 M00355_2.00	Homo sapiens	NNNATNWNN	NNWNATNNN	PBM Barrera et al.(2016) PAX3_P50L	0.995	0.995
PAX3 M00356_2.00	Homo sapiens	NNKWCAYDDWN	NWHHRTGWMNN	PBM Barrera et al.(2016) PAX3_R270C	0.995	0.995
PAX3 M00357_2.00	Homo sapiens	NNNATNWNN	NNWNATNNN	PBM Barrera et al.(2016) PAX3_R56L	0.995	0.995
PAX3 M00359_2.00	Homo sapiens	NTAATYRV	BYRATTAN	PBM Barrera et al.(2016) PAX3_Y90H	0.995	0.995
Pax7 M00541_2.00	Mus musculus	NNVATTWN	NWAATBNN	PBM Berger et al.(2008) Pax7_3783	0.951	0.951
PAX7 M03292_2.00	Homo sapiens	WAATYRATTA	TAATYRATTW	SELEX Jolma et al.(2013) PAX7_1	0.951	0.951
PAX7 M03293_2.00	Homo sapiens	TAATYGATTA	TAATCRATTA	SELEX Jolma et al.(2013) PAX7_2	0.951	0.951
PAX7 M05416_2.00	Homo sapiens	NDSCGTGACGAATYR	YRATTCGTCACGSHN	SELEX Yin et al.(2017) PAX7_eDBD_HT-SELEX_1	0.951	0.951
PAX7 M05417_2.00	Homo sapiens	NSGTCACGSHWRTTAN	NTAAYWDSCGTGACSN	SELEX Yin et al.(2017) PAX7_eDBD_HT-SELEX_2	0.951	0.951
PAX7 M05418_2.00	Homo sapiens	NNAATCRATTWN	NWAATYGATTNN	SELEX Yin et al.(2017) PAX7_eDBD_HT-SELEX_3	0.951	0.951
PAX7 M05422_2.00	Homo sapiens	BVATTMGTCACGSHN	NDSCGTGACKAATBV	SELEX Yin et al.(2017) PAX7_FL_HT-SELEX_1	0.951	0.951
PAX7 M05423_2.00	Homo sapiens	NSGTCACGSYWATTAN	NTAATWRSCGTGACSN	SELEX Yin et al.(2017) PAX7_FL_HT-SELEX_2	0.951	0.951
PAX7 M05424_2.00	Homo sapiens	NTAATYGATTAN	NTAATCRATTAN	SELEX Yin et al.(2017) PAX7_FL_HT-SELEX_3	0.951	0.951
PAX7 M05874_2.00	Homo sapiens	ATTMGTYACGSHN	NDSCGTRACKAAT	SMiLE-seq Isakova et al.(2017) PAX7	0.951	0.951
Pax7 M09586_2.00	Mus musculus	NNNNNYAATTDNNHAATTAN	NTAATTDNNHAATTRNNNNN	Misc Heinz et al.(2010) Myoblast-Pax7_GSE25064_1	0.951	0.951
Pax7 M09587_2.00	Mus musculus	DTAATYDGATTA	TAATCHRATTAH	Misc Heinz et al.(2010) Myoblast-Pax7_GSE25064_2	0.951	0.951
Pax7 M09588_2.00	Mus musculus	TAATTGATTW	WAATCAATTA	Misc Heinz et al.(2010) Myoblast-Pax7_GSE25064_3	0.951	0.951
PAX7 M05419_2.00	Homo sapiens	NVATTVGTCRCGSYN	NRSCGYGACBAATBN	SELEX Yin et al.(2017) PAX7_eDBD_Methyl-HT-SELEX_1	0.951	0.951
PAX7 M05420_2.00	Homo sapiens	NNGTCACGSHHRTTAN	NTAAYDDSCGTGACNN	SELEX Yin et al.(2017) PAX7_eDBD_Methyl-HT-SELEX_2	0.951	0.951
PAX7 M05421_2.00	Homo sapiens	NNAATCRATTWN	NWAATYGATTNN	SELEX Yin et al.(2017) PAX7_eDBD_Methyl-HT-SELEX_3	0.951	0.951
PAX7 M05425_2.00	Homo sapiens	YRATTMGTCACGSHN	NDSCGTGACKAATYR	SELEX Yin et al.(2017) PAX7_FL_Methyl-HT-SELEX_1	0.951	0.951
PAX7 M05426_2.00	Homo sapiens	NSGTCACGSYWATTAN	NTAATWRSCGTGACSN	SELEX Yin et al.(2017) PAX7_FL_Methyl-HT-SELEX_2	0.951	0.951
PAX7 M05427_2.00	Homo sapiens	NTAATYGATTAN	NTAATCRATTAN	SELEX Yin et al.(2017) PAX7_FL_Methyl-HT-SELEX_3	0.951	0.951
prd M03894_2.00	Drosophila melanogaster	VATTVGTCACGS	SCGTGACBAATB	SELEX Nitta et al.(2015) prd_1	0.813	0.813
prd M03895_2.00	Drosophila melanogaster	NRATCRATYN	NRATYGATYN	SELEX Nitta et al.(2015) prd_2	0.813	0.813
prd M06555_2.00	Drosophila melanogaster	HSWAACNGH	DCNGTTWSD	B1H Mathelier et al.(2014) MA0239.1	0.813	0.813
prd M09684_2.00	Drosophila melanogaster	HMVNTHHKWMACGS	SCGTKWMDDANBKD	Misc Kulakovskiy et al.(2009) prd	0.813	0.813
prd M10818_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$PRD_Q6	0.813	0.813
gsb-n M03888_2.00	Drosophila melanogaster	SCGTRWCKAATB	VATTMGWYACGS	SELEX Nitta et al.(2015) gsb-n_1	0.791	0.791
gsb M03889_2.00	Drosophila melanogaster	RATTMGTCACGSN	NSCGTGACKAATY	SELEX Nitta et al.(2015) gsb_1	0.769	0.769
gsb M03890_2.00	Drosophila melanogaster	NNNAATCRATTWNN	NNWAATYGATTNNN	SELEX Nitta et al.(2015) gsb_2	0.769	0.769
gsb M03891_2.00	Drosophila melanogaster	RTBDMTAATTGATTD	HAATCAATTAKHVAY	SELEX Nitta et al.(2015) gsb_3	0.769	0.769
gsb M03892_2.00	Drosophila melanogaster	NNTAATYGATTANN	NNTAATCRATTANN	SELEX Nitta et al.(2015) gsb_4	0.769	0.769
gsb M03893_2.00	Drosophila melanogaster	NSCGTGACKAATBV	BVATTMGTCACGSN	SELEX Nitta et al.(2015) gsb_5	0.769	0.769
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCPOP00000005658	Paired box	38	163	GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILR
ENSCPOP00000005658	Homeodomain	224	280	RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK

Links
Other Homeodomain,Paired box family TFs
Other *Cavia porcellus* TFs

241 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
NV16594	Nasonia vitripennis	NV16594	I	0.000
HelroG63031	Helobdella robusta	HelroG63031	N	0.000
ISCW018625	Ixodes scapularis	ISCW018625	N	0.000
L798_01241	Zootermopsis nevadensis	L798_01241	N	0.000
LotgiG127403	Lottia gigantea	LotgiG127403	N	0.000
MCINX015160	Melitaea cinxia	MCINX015160	N	0.000
NEMVEDRAFT_v1g96877	Nematostella vectensis	NEMVEDRAFT_v1g96877	N	0.000
NV13641	Nasonia vitripennis	NV13641	N	0.000
ENSSTOG00000014736	Ictidomys tridecemlineatus	ENSSTOG00000014736	N	0.000
Tal_R006980	Tyto alba	Tal_R006980	N	0.000
PHUM613040	Pediculus humanus	PHUM613040	N	0.000
SMAR015279	Strigamia maritima	SMAR015279	N	0.000
SPU_014249	Strongylocentrotus purpuratus	SPU_014249	N	0.000
TC001448	Tribolium castaneum	TC001448	N	0.000
tetur01g16040	Tetranychus urticae	tetur01g16040	N	0.000
Aan_R007988	Calypte anna	Aan_R007988	N	0.000
GB52114	Apis mellifera	GB52114	N	0.000
trh	Drosophila melanogaster	FBgn0262139	N	0.000
NPAS3	Tupaia belangeri	ENSTBEG00000016041	N	0.000
ENSTGUG00000011911	Taeniopygia guttata	ENSTGUG00000011911	N	0.000
NPAS3	Tursiops truncatus	ENSTTRG00000003266	N	0.000
NPAS1	Tursiops truncatus	ENSTTRG00000011416	N	0.000
NPAS3	Vicugna pacos	ENSVPAG00000001108	N	0.000
trh	Drosophila sechellia	FBgn0025046	N	0.000
GA19928	Drosophila pseudoobscura	FBgn0079924	N	0.000
GG14662	Drosophila erecta	FBgn0106918	N	0.000
GH15456	Drosophila grimshawi	FBgn0122928	N	0.000
GH23748	Drosophila grimshawi	FBgn0131205	N	0.000
GI16736	Drosophila mojavensis	FBgn0139484	N	0.000
GD25707	Drosophila simulans	FBgn0196992	N	0.000
GJ12482	Drosophila virilis	FBgn0199724	N	0.000
GK20151	Drosophila willistoni	FBgn0222148	N	0.000
GE21022	Drosophila yakuba	FBgn0238304	N	0.000
Afo_R000495	Aptenodytes forsteri	Afo_R000495	N	0.000
Brh_R013374	Buceros rhinoceros	Brh_R013374	N	0.000
ACOM029080	Anopheles coluzzii	ACOM029080	N	0.000
ACUA021406	Anopheles culicifacies	ACUA021406	N	0.000
ADIR001051	Anopheles dirus	ADIR001051	N	0.000
AEPI007278	Anopheles epiroticus	AEPI007278	N	0.000
AFAF017713	Anopheles farauti	AFAF017713	N	0.000
AFUN004699	Anopheles funestus	AFUN004699	N	0.000
AMAM000698	Anopheles maculatus	AMAM000698	N	0.000
AMEC022213	Anopheles melas	AMEC022213	N	0.000
AMEM001368	Anopheles merus	AMEM001368	N	0.000
AMIN002121	Anopheles minimus	AMIN002121	N	0.000
AQUA005712	Anopheles quadriannulatus	AQUA005712	N	0.000
ASIS013948	Anopheles sinensis	ASIS013948	N	0.000
ASTEI06194	Anopheles stephensi	ASTEI06194	N	0.000
BGLB001139	Biomphalaria glabrata	BGLB001139	N	0.000
AATE003730	Anopheles atroparvus	AATE003730	N	0.000
AARA001122	Anopheles arabiensis	AARA001122	N	0.000
AALB007750	Anopheles albimanus	AALB007750	N	0.000
Cflo_02462--XP_391937.2_APIME	Camponotus floridanus	Cflo_02462--XP_391937.2_APIME	N	0.000
ENSP00000348460-D1	Bos grunniens	ENSP00000348460-D1	N	0.000
ENSP00000348460	Macaca fascicularis	ENSP00000348460	N	0.000
ENSP00000405290	Macaca fascicularis	ENSP00000405290	N	0.000
Gfo_R012966	Geospiza fortis	Gfo_R012966	N	0.000
Hsal_10736--XP_391937.2_APIME	Harpegnathos saltator	Hsal_10736--XP_391937.2_APIME	N	0.000
Pvit_04747	Pogona vitticeps	Pvit_04747	N	0.000
gw.84.113.1	Branchiostoma floridae	gw.84.113.1	N	0.000
Ocbimv22029779m.g	Octopus bimaculoides	Ocbimv22029779m.g	N	0.000
Sakowv30006415m.g	Saccoglossus kowalevskii	Sakowv30006415m.g	N	0.000
CLEC007310	Cimex lectularius	CLEC007310	N	0.000
LCUP010821	Lucilia cuprina	LCUP010821	N	0.000
LDEC011477	Leptinotarsa decemlineata	LDEC011477	N	0.000
npas3	Xenopus tropicalis	XB-GENE-999791	N	0.000
MDOA009035	Musca domestica	MDOA009035	N	0.000
CpipJ_CPIJ006378	Culex pipiens	CpipJ_CPIJ006378	N	0.000
NPAS1	Cavia porcellus	ENSCPOG00000023069	N	0.000
ENSCSAG00000003006	Chlorocebus sabaeus	ENSCSAG00000003006	N	0.000
NPAS1	Dasypus novemcinctus	ENSDNOG00000035321	N	0.000
Npas3	Dipodomys ordii	ENSDORG00000000860	N	0.000
ENSECAG00000004630	Equus caballus	ENSECAG00000004630	N	0.000
NPAS3	Erinaceus europaeus	ENSEEUG00000006528	N	0.000
NPAS3	Echinops telfairi	ENSETEG00000016603	N	0.000
NPAS1	Felis catus	ENSFCAG00000004833	N	0.000
NPAS1	Homo sapiens	ENSG00000130751	N	0.000
NPAS3	Homo sapiens	ENSG00000151322	N	0.000
NPAS3	Gallus gallus	ENSGALG00000029022	N	0.000
NPAS1	Gorilla gorilla	ENSGGOG00000013398	N	0.000
NPAS3	Gorilla gorilla	ENSGGOG00000022941	N	0.000
ENSLACG00000001145	Latimeria chalumnae	ENSLACG00000001145	N	0.000
NPAS3	Cavia porcellus	ENSCPOG00000006976	N	0.000
NPAS1	Callithrix jacchus	ENSCJAG00000011666	N	0.000
NPAS3	Callithrix jacchus	ENSCJAG00000005437	N	0.000
AAEL002343	Aedes aegypti	AAEL002343	N	0.000
AAEL014740	Aedes aegypti	AAEL014740	N	0.000
ACEP14936	Atta cephalotes	ACEP14936	N	0.000
ACYPI001635	Acyrthosiphon pisum	ACYPI001635	N	0.000
ADAC003908	Anopheles darlingi	ADAC003908	N	0.000
AGAP000056	Anopheles gambiae	AGAP000056	N	0.000
CGI_10014877	Crassostrea gigas	CGI_10014877	N	0.000
CPIJ006378	Culex quinquefasciatus	CPIJ006378	N	0.000
DAPPUDRAFT_59022	Daphnia pulex	DAPPUDRAFT_59022	N	0.000
ENSAMEG00000018716	Ailuropoda melanoleuca	ENSAMEG00000018716	N	0.000
ENSAPLG00000000714	Anas platyrhynchos	ENSAPLG00000000714	N	0.000
NPAS1	Bos taurus	ENSBTAG00000015576	N	0.000
NPAS1	Canis familiaris	ENSCAFG00000032405	N	0.000
NPAS3	Choloepus hoffmanni	ENSCHOG00000013756	N	0.000
NPAS3	Loxodonta africana	ENSLAFG00000007169	N	0.000
ENSMEUG00000000606	Macropus eugenii	ENSMEUG00000000606	N	0.000
ENSMEUG00000012966	Macropus eugenii	ENSMEUG00000012966	N	0.000
NPAS1	Ochotona princeps	ENSOPRG00000014860	N	0.000
ENSPANG00000014704	Papio anubis	ENSPANG00000014704	N	0.000
ENSPCAG00000000784	Procavia capensis	ENSPCAG00000000784	N	0.000
NPAS3	Procavia capensis	ENSPCAG00000007391	N	0.000
ENSPPYG00000010165	Pongo abelii	ENSPPYG00000010165	N	0.000
ENSPSIG00000017052	Pelodiscus sinensis	ENSPSIG00000017052	N	0.000
NPAS3	Pan troglodytes	ENSPTRG00000006249	N	0.000
NPAS1	Pan troglodytes	ENSPTRG00000011199	N	0.000
Npas1	Rattus norvegicus	ENSRNOG00000015376	N	0.000
NPAS3	Sorex araneus	ENSSARG00000003164	N	0.000
ENSSARG00000014127	Sorex araneus	ENSSARG00000014127	N	0.000
ENSSHAG00000011475	Sarcophilus harrisii	ENSSHAG00000011475	N	0.000
NPAS1	Sus scrofa	ENSSSCG00000003108	N	0.000
ENSSSCG00000024473	Sus scrofa	ENSSSCG00000024473	N	0.000
NPAS3	Ochotona princeps	ENSOPRG00000008184	N	0.000
NPAS3	Otolemur garnettii	ENSOGAG00000014886	N	0.000
NPAS1	Otolemur garnettii	ENSOGAG00000012829	N	0.000
ENSMGAG00000016559	Meleagris gallopavo	ENSMGAG00000016559	N	0.000
NPAS1	Microcebus murinus	ENSMICG00000006346	N	0.000
NPAS1	Macaca mulatta	ENSMMUG00000011330	N	0.000
NPAS3	Macaca mulatta	ENSMMUG00000014839	N	0.000
NPAS1	Monodelphis domestica	ENSMODG00000009053	N	0.000
ENSMODG00000024103	Monodelphis domestica	ENSMODG00000024103	N	0.000
ENSMPUG00000001046	Mustela putorius furo	ENSMPUG00000001046	N	0.000
ENSMPUG00000005118	Mustela putorius furo	ENSMPUG00000005118	N	0.000
Npas1	Mus musculus	ENSMUSG00000001988	N	0.000
Npas3	Mus musculus	ENSMUSG00000021010	N	0.000
ENSNLEG00000002946	Nomascus leucogenys	ENSNLEG00000002946	N	0.000
ENSNLEG00000003239	Nomascus leucogenys	ENSNLEG00000003239	N	0.000
ENSOANG00000014043	Ornithorhynchus anatinus	ENSOANG00000014043	N	0.000
ENSOARG00000010869	Ovis aries	ENSOARG00000010869	N	0.000
ENSSTOG00000003396	Ictidomys tridecemlineatus	ENSSTOG00000003396	N	0.000

PAX3 (Cavia porcellus) Homeodomain,Paired box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

241 Related TFs

PAX3 **(Cavia porcellus)
Homeodomain,Paired box**