CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

PAX3 *(Cavia porcellus)* Homeodomain,Paired box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox) PF00292 (PAX)	IPR001356 IPR001523	ENSCPOG00000006276	T237295_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PAX3 M00358_2.00	Homo sapiens	NRTNNNN	NNNNAYN	PBM Barrera et al.(2016) PAX3_REF	1.000	1.000
PAX3 M03297_2.00	Homo sapiens	TAATYRATTA	TAATYRATTA	SELEX Jolma et al.(2013) PAX3_1	1.000	1.000
PAX3 M03885_2.00	Homo sapiens	NNTAATYGATTANN	NNTAATCRATTANN	SELEX Nitta et al.(2015) PAX3_1	1.000	1.000
PAX3 M03886_2.00	Homo sapiens	RATTMGTCACGST	ASCGTGACKAATY	SELEX Nitta et al.(2015) PAX3_2	1.000	1.000
PAX3 M05438_2.00	Homo sapiens	NSGTCACGSHHATTAN	NTAATDDSCGTGACSN	SELEX Yin et al.(2017) PAX3_eDBD_HT-SELEX_1	1.000	1.000
PAX3 M05439_2.00	Homo sapiens	NDAATCRATTMN	NKAATYGATTHN	SELEX Yin et al.(2017) PAX3_eDBD_HT-SELEX_2	1.000	1.000
PAX3 M05440_2.00	Homo sapiens	NBRATTMGTCACGSHN	NDSCGTGACKAATYVN	SELEX Yin et al.(2017) PAX3_eDBD_HT-SELEX_3	1.000	1.000
PAX3 M09585_2.00	Homo sapiens	WSYRTGACWAATBNN	NNVATTWGTCAYRSW	Misc Heinz et al.(2010) Rh4-PAX3_FKHR_GSE19063	1.000	1.000
PAX3 M10816_2.00	Homo sapiens	TCGTCACRCHYHM	KDRDGYGTGACGA	Transfac Matys et al.(2006) V$PAX3_01	1.000	1.000
PAX3 M10817_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX3_B	1.000	1.000
PAX3 M05441_2.00	Homo sapiens	NNGTCACGSHWRTTAN	NTAAYWDSCGTGACNN	SELEX Yin et al.(2017) PAX3_eDBD_Methyl-HT-SELEX_1	1.000	1.000
PAX3 M05442_2.00	Homo sapiens	NWAATCRATTAN	NTAATYGATTWN	SELEX Yin et al.(2017) PAX3_eDBD_Methyl-HT-SELEX_2	1.000	1.000
PAX3 M05443_2.00	Homo sapiens	NNRATTVGTCRCGSHN	NDSCGYGACBAATYNN	SELEX Yin et al.(2017) PAX3_eDBD_Methyl-HT-SELEX_3	1.000	1.000
PAX3 M00352_2.00	Homo sapiens	VNTAATYR	YRATTANB	PBM Barrera et al.(2016) PAX3_G48R	0.995	0.995
PAX3 M00353_2.00	Homo sapiens	NNNNRTNNN	NNNAYNNNN	PBM Barrera et al.(2016) PAX3_N47H	0.995	0.995
PAX3 M00354_2.00	Homo sapiens	NNNRYNN	NNRYNNN	PBM Barrera et al.(2016) PAX3_N47K	0.995	0.995
PAX3 M00355_2.00	Homo sapiens	NNNATNWNN	NNWNATNNN	PBM Barrera et al.(2016) PAX3_P50L	0.995	0.995
PAX3 M00356_2.00	Homo sapiens	NNKWCAYDDWN	NWHHRTGWMNN	PBM Barrera et al.(2016) PAX3_R270C	0.995	0.995
PAX3 M00357_2.00	Homo sapiens	NNNATNWNN	NNWNATNNN	PBM Barrera et al.(2016) PAX3_R56L	0.995	0.995
PAX3 M00359_2.00	Homo sapiens	NTAATYRV	BYRATTAN	PBM Barrera et al.(2016) PAX3_Y90H	0.995	0.995
Pax7 M00541_2.00	Mus musculus	NNVATTWN	NWAATBNN	PBM Berger et al.(2008) Pax7_3783	0.951	0.951
PAX7 M03292_2.00	Homo sapiens	WAATYRATTA	TAATYRATTW	SELEX Jolma et al.(2013) PAX7_1	0.951	0.951
PAX7 M03293_2.00	Homo sapiens	TAATYGATTA	TAATCRATTA	SELEX Jolma et al.(2013) PAX7_2	0.951	0.951
PAX7 M05416_2.00	Homo sapiens	NDSCGTGACGAATYR	YRATTCGTCACGSHN	SELEX Yin et al.(2017) PAX7_eDBD_HT-SELEX_1	0.951	0.951
PAX7 M05417_2.00	Homo sapiens	NSGTCACGSHWRTTAN	NTAAYWDSCGTGACSN	SELEX Yin et al.(2017) PAX7_eDBD_HT-SELEX_2	0.951	0.951
PAX7 M05418_2.00	Homo sapiens	NNAATCRATTWN	NWAATYGATTNN	SELEX Yin et al.(2017) PAX7_eDBD_HT-SELEX_3	0.951	0.951
PAX7 M05422_2.00	Homo sapiens	BVATTMGTCACGSHN	NDSCGTGACKAATBV	SELEX Yin et al.(2017) PAX7_FL_HT-SELEX_1	0.951	0.951
PAX7 M05423_2.00	Homo sapiens	NSGTCACGSYWATTAN	NTAATWRSCGTGACSN	SELEX Yin et al.(2017) PAX7_FL_HT-SELEX_2	0.951	0.951
PAX7 M05424_2.00	Homo sapiens	NTAATYGATTAN	NTAATCRATTAN	SELEX Yin et al.(2017) PAX7_FL_HT-SELEX_3	0.951	0.951
PAX7 M05874_2.00	Homo sapiens	ATTMGTYACGSHN	NDSCGTRACKAAT	SMiLE-seq Isakova et al.(2017) PAX7	0.951	0.951
Pax7 M09586_2.00	Mus musculus	NNNNNYAATTDNNHAATTAN	NTAATTDNNHAATTRNNNNN	Misc Heinz et al.(2010) Myoblast-Pax7_GSE25064_1	0.951	0.951
Pax7 M09587_2.00	Mus musculus	DTAATYDGATTA	TAATCHRATTAH	Misc Heinz et al.(2010) Myoblast-Pax7_GSE25064_2	0.951	0.951
Pax7 M09588_2.00	Mus musculus	TAATTGATTW	WAATCAATTA	Misc Heinz et al.(2010) Myoblast-Pax7_GSE25064_3	0.951	0.951
PAX7 M05419_2.00	Homo sapiens	NVATTVGTCRCGSYN	NRSCGYGACBAATBN	SELEX Yin et al.(2017) PAX7_eDBD_Methyl-HT-SELEX_1	0.951	0.951
PAX7 M05420_2.00	Homo sapiens	NNGTCACGSHHRTTAN	NTAAYDDSCGTGACNN	SELEX Yin et al.(2017) PAX7_eDBD_Methyl-HT-SELEX_2	0.951	0.951
PAX7 M05421_2.00	Homo sapiens	NNAATCRATTWN	NWAATYGATTNN	SELEX Yin et al.(2017) PAX7_eDBD_Methyl-HT-SELEX_3	0.951	0.951
PAX7 M05425_2.00	Homo sapiens	YRATTMGTCACGSHN	NDSCGTGACKAATYR	SELEX Yin et al.(2017) PAX7_FL_Methyl-HT-SELEX_1	0.951	0.951
PAX7 M05426_2.00	Homo sapiens	NSGTCACGSYWATTAN	NTAATWRSCGTGACSN	SELEX Yin et al.(2017) PAX7_FL_Methyl-HT-SELEX_2	0.951	0.951
PAX7 M05427_2.00	Homo sapiens	NTAATYGATTAN	NTAATCRATTAN	SELEX Yin et al.(2017) PAX7_FL_Methyl-HT-SELEX_3	0.951	0.951
prd M03894_2.00	Drosophila melanogaster	VATTVGTCACGS	SCGTGACBAATB	SELEX Nitta et al.(2015) prd_1	0.813	0.813
prd M03895_2.00	Drosophila melanogaster	NRATCRATYN	NRATYGATYN	SELEX Nitta et al.(2015) prd_2	0.813	0.813
prd M06555_2.00	Drosophila melanogaster	HSWAACNGH	DCNGTTWSD	B1H Mathelier et al.(2014) MA0239.1	0.813	0.813
prd M09684_2.00	Drosophila melanogaster	HMVNTHHKWMACGS	SCGTKWMDDANBKD	Misc Kulakovskiy et al.(2009) prd	0.813	0.813
prd M10818_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$PRD_Q6	0.813	0.813
gsb-n M03888_2.00	Drosophila melanogaster	SCGTRWCKAATB	VATTMGWYACGS	SELEX Nitta et al.(2015) gsb-n_1	0.791	0.791
gsb M03889_2.00	Drosophila melanogaster	RATTMGTCACGSN	NSCGTGACKAATY	SELEX Nitta et al.(2015) gsb_1	0.769	0.769
gsb M03890_2.00	Drosophila melanogaster	NNNAATCRATTWNN	NNWAATYGATTNNN	SELEX Nitta et al.(2015) gsb_2	0.769	0.769
gsb M03891_2.00	Drosophila melanogaster	RTBDMTAATTGATTD	HAATCAATTAKHVAY	SELEX Nitta et al.(2015) gsb_3	0.769	0.769
gsb M03892_2.00	Drosophila melanogaster	NNTAATYGATTANN	NNTAATCRATTANN	SELEX Nitta et al.(2015) gsb_4	0.769	0.769
gsb M03893_2.00	Drosophila melanogaster	NSCGTGACKAATBV	BVATTMGTCACGSN	SELEX Nitta et al.(2015) gsb_5	0.769	0.769
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCPOP00000005658	Paired box	38	163	GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILR
ENSCPOP00000005658	Homeodomain	224	280	RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK

Links
Other Homeodomain,Paired box family TFs
Other *Cavia porcellus* TFs

241 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
WBGene00244804	Onchocerca volvulus	WBGene00244804	N	0.000
SMUV_0000490901	Syphacia muris	SMUV_0000490901	N	0.000
nOo.2.0.1.g08019	Onchocerca ochengi	nOo.2.0.1.g08019	N	0.000
NBR_0001294901	Nippostrongylus brasiliensis	NBR_0001294901	N	0.000
L898_g20656	Steinernema monticolum	L898_g20656	N	0.000
L892_g25366	Steinernema scapterisci	L892_g25366	N	0.000
L889_g15825	Steinernema feltiae	L889_g15825	N	0.000
L596_g26620	Steinernema carpocapsae	L596_g26620	N	0.000
EVEC_0000342601	Enterobius vermicularis	EVEC_0000342601	N	0.000
DME_0000929001	Dracunculus medinensis	DME_0000929001	N	0.000
ASU_00847	Ascaris suum	ASU_00847	N	0.000
ASIM_0000209101	Anisakis simplex	ASIM_0000209101	N	0.000
ASIM_0000112501	Anisakis simplex	ASIM_0000112501	N	0.000
ALUE_0001231901	Ascaris lumbricoides	ALUE_0001231901	N	0.000
ACOC_0000845101	Angiostrongylus costaricensis	ACOC_0000845101	N	0.000
ACAC_0001009501	Angiostrongylus cantonensis	ACAC_0001009501	N	0.000
TCNE_0001348801	Toxocara canis	TCNE_0001348801	N	0.000

PAX3 (Cavia porcellus) Homeodomain,Paired box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

241 Related TFs

PAX3 **(Cavia porcellus)
Homeodomain,Paired box**