CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PAX3
(
Cavia porcellus
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSCPOG00000006276
T237295_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX3
M00358_2.00
Homo sapiens
NRTNNNN
NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
1.000
1.000
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA
TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
1.000
1.000
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
1.000
1.000
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST
ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
1.000
1.000
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN
NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
1.000
1.000
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN
NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
1.000
1.000
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN
NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
1.000
1.000
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN
NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
1.000
1.000
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM
KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
1.000
1.000
PAX3
M10817_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
1.000
1.000
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN
NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
1.000
1.000
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN
NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
1.000
1.000
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN
NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
1.000
1.000
PAX3
M00352_2.00
Homo sapiens
VNTAATYR
YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.995
0.995
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN
NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.995
0.995
PAX3
M00354_2.00
Homo sapiens
NNNRYNN
NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.995
0.995
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.995
0.995
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN
NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.995
0.995
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.995
0.995
PAX3
M00359_2.00
Homo sapiens
NTAATYRV
BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.995
0.995
Pax7
M00541_2.00
Mus musculus
NNVATTWN
NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.951
0.951
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA
TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.951
0.951
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA
TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.951
0.951
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR
YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.951
0.951
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN
NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.951
0.951
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.951
0.951
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN
NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.951
0.951
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.951
0.951
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.951
0.951
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN
NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.951
0.951
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN
NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.951
0.951
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA
TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.951
0.951
Pax7
M09588_2.00
Mus musculus
TAATTGATTW
WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.951
0.951
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN
NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.951
0.951
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN
NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.951
0.951
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.951
0.951
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN
NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.951
0.951
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.951
0.951
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.951
0.951
prd
M03894_2.00
Drosophila melanogaster
VATTVGTCACGS
SCGTGACBAATB
SELEX
Nitta et al.(2015)
prd_1
0.813
0.813
prd
M03895_2.00
Drosophila melanogaster
NRATCRATYN
NRATYGATYN
SELEX
Nitta et al.(2015)
prd_2
0.813
0.813
prd
M06555_2.00
Drosophila melanogaster
HSWAACNGH
DCNGTTWSD
B1H
Mathelier et al.(2014)
MA0239.1
0.813
0.813
prd
M09684_2.00
Drosophila melanogaster
HMVNTHHKWMACGS
SCGTKWMDDANBKD
Misc
Kulakovskiy et al.(2009)
prd
0.813
0.813
prd
M10818_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$PRD_Q6
0.813
0.813
gsb-n
M03888_2.00
Drosophila melanogaster
SCGTRWCKAATB
VATTMGWYACGS
SELEX
Nitta et al.(2015)
gsb-n_1
0.791
0.791
gsb
M03889_2.00
Drosophila melanogaster
RATTMGTCACGSN
NSCGTGACKAATY
SELEX
Nitta et al.(2015)
gsb_1
0.769
0.769
gsb
M03890_2.00
Drosophila melanogaster
NNNAATCRATTWNN
NNWAATYGATTNNN
SELEX
Nitta et al.(2015)
gsb_2
0.769
0.769
gsb
M03891_2.00
Drosophila melanogaster
RTBDMTAATTGATTD
HAATCAATTAKHVAY
SELEX
Nitta et al.(2015)
gsb_3
0.769
0.769
gsb
M03892_2.00
Drosophila melanogaster
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
gsb_4
0.769
0.769
gsb
M03893_2.00
Drosophila melanogaster
NSCGTGACKAATBV
BVATTMGTCACGSN
SELEX
Nitta et al.(2015)
gsb_5
0.769
0.769
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000005658
Paired box
38
163
GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILR
ENSCPOP00000005658
Homeodomain
224
280
RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK
Links
Other
Homeodomain,Paired box
family TFs
Other
Cavia porcellus
TFs
241 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NV16594
Nasonia vitripennis
NV16594
I
0.000
HelroG63031
Helobdella robusta
HelroG63031
N
0.000
ISCW018625
Ixodes scapularis
ISCW018625
N
0.000
L798_01241
Zootermopsis nevadensis
L798_01241
N
0.000
LotgiG127403
Lottia gigantea
LotgiG127403
N
0.000
MCINX015160
Melitaea cinxia
MCINX015160
N
0.000
NEMVEDRAFT_v1g96877
Nematostella vectensis
NEMVEDRAFT_v1g96877
N
0.000
NV13641
Nasonia vitripennis
NV13641
N
0.000
ENSSTOG00000014736
Ictidomys tridecemlineatus
ENSSTOG00000014736
N
0.000
Tal_R006980
Tyto alba
Tal_R006980
N
0.000
PHUM613040
Pediculus humanus
PHUM613040
N
0.000
SMAR015279
Strigamia maritima
SMAR015279
N
0.000
SPU_014249
Strongylocentrotus purpuratus
SPU_014249
N
0.000
TC001448
Tribolium castaneum
TC001448
N
0.000
tetur01g16040
Tetranychus urticae
tetur01g16040
N
0.000
Aan_R007988
Calypte anna
Aan_R007988
N
0.000
GB52114
Apis mellifera
GB52114
N
0.000
trh
Drosophila melanogaster
FBgn0262139
N
0.000
NPAS3
Tupaia belangeri
ENSTBEG00000016041
N
0.000
ENSTGUG00000011911
Taeniopygia guttata
ENSTGUG00000011911
N
0.000
NPAS3
Tursiops truncatus
ENSTTRG00000003266
N
0.000
NPAS1
Tursiops truncatus
ENSTTRG00000011416
N
0.000
NPAS3
Vicugna pacos
ENSVPAG00000001108
N
0.000
trh
Drosophila sechellia
FBgn0025046
N
0.000
GA19928
Drosophila pseudoobscura
FBgn0079924
N
0.000
GG14662
Drosophila erecta
FBgn0106918
N
0.000
GH15456
Drosophila grimshawi
FBgn0122928
N
0.000
GH23748
Drosophila grimshawi
FBgn0131205
N
0.000
GI16736
Drosophila mojavensis
FBgn0139484
N
0.000
GD25707
Drosophila simulans
FBgn0196992
N
0.000
GJ12482
Drosophila virilis
FBgn0199724
N
0.000
GK20151
Drosophila willistoni
FBgn0222148
N
0.000
GE21022
Drosophila yakuba
FBgn0238304
N
0.000
Afo_R000495
Aptenodytes forsteri
Afo_R000495
N
0.000
Brh_R013374
Buceros rhinoceros
Brh_R013374
N
0.000
ACOM029080
Anopheles coluzzii
ACOM029080
N
0.000
ACUA021406
Anopheles culicifacies
ACUA021406
N
0.000
ADIR001051
Anopheles dirus
ADIR001051
N
0.000
AEPI007278
Anopheles epiroticus
AEPI007278
N
0.000
AFAF017713
Anopheles farauti
AFAF017713
N
0.000
AFUN004699
Anopheles funestus
AFUN004699
N
0.000
AMAM000698
Anopheles maculatus
AMAM000698
N
0.000
AMEC022213
Anopheles melas
AMEC022213
N
0.000
AMEM001368
Anopheles merus
AMEM001368
N
0.000
AMIN002121
Anopheles minimus
AMIN002121
N
0.000
AQUA005712
Anopheles quadriannulatus
AQUA005712
N
0.000
ASIS013948
Anopheles sinensis
ASIS013948
N
0.000
ASTEI06194
Anopheles stephensi
ASTEI06194
N
0.000
BGLB001139
Biomphalaria glabrata
BGLB001139
N
0.000
AATE003730
Anopheles atroparvus
AATE003730
N
0.000
AARA001122
Anopheles arabiensis
AARA001122
N
0.000
AALB007750
Anopheles albimanus
AALB007750
N
0.000
Cflo_02462--XP_391937.2_APIME
Camponotus floridanus
Cflo_02462--XP_391937.2_APIME
N
0.000
ENSP00000348460-D1
Bos grunniens
ENSP00000348460-D1
N
0.000
ENSP00000348460
Macaca fascicularis
ENSP00000348460
N
0.000
ENSP00000405290
Macaca fascicularis
ENSP00000405290
N
0.000
Gfo_R012966
Geospiza fortis
Gfo_R012966
N
0.000
Hsal_10736--XP_391937.2_APIME
Harpegnathos saltator
Hsal_10736--XP_391937.2_APIME
N
0.000
Pvit_04747
Pogona vitticeps
Pvit_04747
N
0.000
gw.84.113.1
Branchiostoma floridae
gw.84.113.1
N
0.000
Ocbimv22029779m.g
Octopus bimaculoides
Ocbimv22029779m.g
N
0.000
Sakowv30006415m.g
Saccoglossus kowalevskii
Sakowv30006415m.g
N
0.000
CLEC007310
Cimex lectularius
CLEC007310
N
0.000
LCUP010821
Lucilia cuprina
LCUP010821
N
0.000
LDEC011477
Leptinotarsa decemlineata
LDEC011477
N
0.000
npas3
Xenopus tropicalis
XB-GENE-999791
N
0.000
MDOA009035
Musca domestica
MDOA009035
N
0.000
CpipJ_CPIJ006378
Culex pipiens
CpipJ_CPIJ006378
N
0.000
NPAS1
Cavia porcellus
ENSCPOG00000023069
N
0.000
ENSCSAG00000003006
Chlorocebus sabaeus
ENSCSAG00000003006
N
0.000
NPAS1
Dasypus novemcinctus
ENSDNOG00000035321
N
0.000
Npas3
Dipodomys ordii
ENSDORG00000000860
N
0.000
ENSECAG00000004630
Equus caballus
ENSECAG00000004630
N
0.000
NPAS3
Erinaceus europaeus
ENSEEUG00000006528
N
0.000
NPAS3
Echinops telfairi
ENSETEG00000016603
N
0.000
NPAS1
Felis catus
ENSFCAG00000004833
N
0.000
NPAS1
Homo sapiens
ENSG00000130751
N
0.000
NPAS3
Homo sapiens
ENSG00000151322
N
0.000
NPAS3
Gallus gallus
ENSGALG00000029022
N
0.000
NPAS1
Gorilla gorilla
ENSGGOG00000013398
N
0.000
NPAS3
Gorilla gorilla
ENSGGOG00000022941
N
0.000
ENSLACG00000001145
Latimeria chalumnae
ENSLACG00000001145
N
0.000
NPAS3
Cavia porcellus
ENSCPOG00000006976
N
0.000
NPAS1
Callithrix jacchus
ENSCJAG00000011666
N
0.000
NPAS3
Callithrix jacchus
ENSCJAG00000005437
N
0.000
AAEL002343
Aedes aegypti
AAEL002343
N
0.000
AAEL014740
Aedes aegypti
AAEL014740
N
0.000
ACEP14936
Atta cephalotes
ACEP14936
N
0.000
ACYPI001635
Acyrthosiphon pisum
ACYPI001635
N
0.000
ADAC003908
Anopheles darlingi
ADAC003908
N
0.000
AGAP000056
Anopheles gambiae
AGAP000056
N
0.000
CGI_10014877
Crassostrea gigas
CGI_10014877
N
0.000
CPIJ006378
Culex quinquefasciatus
CPIJ006378
N
0.000
DAPPUDRAFT_59022
Daphnia pulex
DAPPUDRAFT_59022
N
0.000
ENSAMEG00000018716
Ailuropoda melanoleuca
ENSAMEG00000018716
N
0.000
ENSAPLG00000000714
Anas platyrhynchos
ENSAPLG00000000714
N
0.000
NPAS1
Bos taurus
ENSBTAG00000015576
N
0.000
NPAS1
Canis familiaris
ENSCAFG00000032405
N
0.000
NPAS3
Choloepus hoffmanni
ENSCHOG00000013756
N
0.000
NPAS3
Loxodonta africana
ENSLAFG00000007169
N
0.000
ENSMEUG00000000606
Macropus eugenii
ENSMEUG00000000606
N
0.000
ENSMEUG00000012966
Macropus eugenii
ENSMEUG00000012966
N
0.000
NPAS1
Ochotona princeps
ENSOPRG00000014860
N
0.000
ENSPANG00000014704
Papio anubis
ENSPANG00000014704
N
0.000
ENSPCAG00000000784
Procavia capensis
ENSPCAG00000000784
N
0.000
NPAS3
Procavia capensis
ENSPCAG00000007391
N
0.000
ENSPPYG00000010165
Pongo abelii
ENSPPYG00000010165
N
0.000
ENSPSIG00000017052
Pelodiscus sinensis
ENSPSIG00000017052
N
0.000
NPAS3
Pan troglodytes
ENSPTRG00000006249
N
0.000
NPAS1
Pan troglodytes
ENSPTRG00000011199
N
0.000
Npas1
Rattus norvegicus
ENSRNOG00000015376
N
0.000
NPAS3
Sorex araneus
ENSSARG00000003164
N
0.000
ENSSARG00000014127
Sorex araneus
ENSSARG00000014127
N
0.000
ENSSHAG00000011475
Sarcophilus harrisii
ENSSHAG00000011475
N
0.000
NPAS1
Sus scrofa
ENSSSCG00000003108
N
0.000
ENSSSCG00000024473
Sus scrofa
ENSSSCG00000024473
N
0.000
NPAS3
Ochotona princeps
ENSOPRG00000008184
N
0.000
NPAS3
Otolemur garnettii
ENSOGAG00000014886
N
0.000
NPAS1
Otolemur garnettii
ENSOGAG00000012829
N
0.000
ENSMGAG00000016559
Meleagris gallopavo
ENSMGAG00000016559
N
0.000
NPAS1
Microcebus murinus
ENSMICG00000006346
N
0.000
NPAS1
Macaca mulatta
ENSMMUG00000011330
N
0.000
NPAS3
Macaca mulatta
ENSMMUG00000014839
N
0.000
NPAS1
Monodelphis domestica
ENSMODG00000009053
N
0.000
ENSMODG00000024103
Monodelphis domestica
ENSMODG00000024103
N
0.000
ENSMPUG00000001046
Mustela putorius furo
ENSMPUG00000001046
N
0.000
ENSMPUG00000005118
Mustela putorius furo
ENSMPUG00000005118
N
0.000
Npas1
Mus musculus
ENSMUSG00000001988
N
0.000
Npas3
Mus musculus
ENSMUSG00000021010
N
0.000
ENSNLEG00000002946
Nomascus leucogenys
ENSNLEG00000002946
N
0.000
ENSNLEG00000003239
Nomascus leucogenys
ENSNLEG00000003239
N
0.000
ENSOANG00000014043
Ornithorhynchus anatinus
ENSOANG00000014043
N
0.000
ENSOARG00000010869
Ovis aries
ENSOARG00000010869
N
0.000
ENSSTOG00000003396
Ictidomys tridecemlineatus
ENSSTOG00000003396
N
0.000