PAX3 (Erinaceus europaeus)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSEEUG00000012346 T237326_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX3
M00358_2.00
Homo sapiens
NRTNNNN

NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.995 0.995
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA

TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.995 0.995
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.995 0.995
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST

ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.995 0.995
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN

NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.995 0.995
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN

NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.995 0.995
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN

NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.995 0.995
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN

NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.995 0.995
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM

KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.995 0.995
PAX3
M10817_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.995 0.995
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN

NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.995 0.995
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN

NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.995 0.995
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN

NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.995 0.995
PAX3
M00352_2.00
Homo sapiens
VNTAATYR

YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.989 0.989
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN

NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.989 0.989
PAX3
M00354_2.00
Homo sapiens
NNNRYNN

NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.989 0.989
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.989 0.989
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN

NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.989 0.989
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.989 0.989
PAX3
M00359_2.00
Homo sapiens
NTAATYRV

BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.989 0.989
Pax7
M00541_2.00
Mus musculus
NNVATTWN

NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.951 0.951
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA

TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.951 0.951
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA

TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.951 0.951
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR

YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.951 0.951
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN

NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.951 0.951
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.951 0.951
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN

NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.951 0.951
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.951 0.951
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.951 0.951
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN

NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.951 0.951
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN

NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.951 0.951
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA

TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.951 0.951
Pax7
M09588_2.00
Mus musculus
TAATTGATTW

WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.951 0.951
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN

NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.951 0.951
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN

NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.951 0.951
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.951 0.951
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN

NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.951 0.951
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.951 0.951
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.951 0.951
prd
M03894_2.00
Drosophila melanogaster
VATTVGTCACGS

SCGTGACBAATB
SELEX
Nitta et al.(2015)
prd_1
0.813 0.813
prd
M03895_2.00
Drosophila melanogaster
NRATCRATYN

NRATYGATYN
SELEX
Nitta et al.(2015)
prd_2
0.813 0.813
prd
M06555_2.00
Drosophila melanogaster
HSWAACNGH

DCNGTTWSD
B1H
Mathelier et al.(2014)
MA0239.1
0.813 0.813
prd
M09684_2.00
Drosophila melanogaster
HMVNTHHKWMACGS

SCGTKWMDDANBKD
Misc
Kulakovskiy et al.(2009)
prd
0.813 0.813
prd
M10818_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$PRD_Q6
0.813 0.813
gsb-n
M03888_2.00
Drosophila melanogaster
SCGTRWCKAATB

VATTMGWYACGS
SELEX
Nitta et al.(2015)
gsb-n_1
0.791 0.791
gsb
M03889_2.00
Drosophila melanogaster
RATTMGTCACGSN

NSCGTGACKAATY
SELEX
Nitta et al.(2015)
gsb_1
0.769 0.769
gsb
M03890_2.00
Drosophila melanogaster
NNNAATCRATTWNN

NNWAATYGATTNNN
SELEX
Nitta et al.(2015)
gsb_2
0.769 0.769
gsb
M03891_2.00
Drosophila melanogaster
RTBDMTAATTGATTD

HAATCAATTAKHVAY
SELEX
Nitta et al.(2015)
gsb_3
0.769 0.769
gsb
M03892_2.00
Drosophila melanogaster
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
gsb_4
0.769 0.769
gsb
M03893_2.00
Drosophila melanogaster
NSCGTGACKAATBV

BVATTMGTCACGSN
SELEX
Nitta et al.(2015)
gsb_5
0.769 0.769
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000011263 Paired box 34 159
ENSEEUP00000011263 Homeodomain 220 276

Links

Other Homeodomain,Paired box family TFs
Other Erinaceus europaeus TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BRADI3G57960 Brachypodium distachyon BRADI3G57960 N 0.000
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.000
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.000
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.000
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.000
MLOC_53580 Hordeum vulgare MLOC_53580 N 0.000
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.000
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.000
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.000
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.000
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.000
mgf020824m Mimulus guttatus mgf020824m I 0.000
OBART02G33770 Oryza barthii OBART02G33770 I 0.000
OB08G24950 Oryza brachyantha OB08G24950 I 0.000
OB02G40680 Oryza brachyantha OB02G40680 I 0.000
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.000
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.000
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.000
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.000
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.000
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.000
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.000
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.000
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.000
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.000
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.000
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I 0.000
BZIP46 Oryza sativa OS06G0211200 I 0.000
BZIP23 Oryza sativa OS02G0766700 I 0.000
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.000
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.000
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.000
Si017618m.g Setaria italica Si017618m.g I 0.000
Si006889m.g Setaria italica Si006889m.g I 0.000
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.000
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.000
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.000
Sb10g007090 Sorghum bicolor Sb10g007090 I 0.000
Traes_6DL_F7015CE89 Triticum aestivum Traes_6DL_F7015CE89 N 0.000
Traes_6AL_E8CD2C02B Triticum aestivum Traes_6AL_E8CD2C02B N 0.000
TRIUR3_27679 Triticum urartu TRIUR3_27679 N 0.000
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.000