GM11922 (Drosophila sechellia)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
FBgn0166863 T237583_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gsb
M03889_2.00
Drosophila melanogaster
RATTMGTCACGSN

NSCGTGACKAATY
SELEX
Nitta et al.(2015)
gsb_1
1.000 1.000
gsb
M03890_2.00
Drosophila melanogaster
NNNAATCRATTWNN

NNWAATYGATTNNN
SELEX
Nitta et al.(2015)
gsb_2
1.000 1.000
gsb
M03891_2.00
Drosophila melanogaster
RTBDMTAATTGATTD

HAATCAATTAKHVAY
SELEX
Nitta et al.(2015)
gsb_3
1.000 1.000
gsb
M03892_2.00
Drosophila melanogaster
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
gsb_4
1.000 1.000
gsb
M03893_2.00
Drosophila melanogaster
NSCGTGACKAATBV

BVATTMGTCACGSN
SELEX
Nitta et al.(2015)
gsb_5
1.000 1.000
prd
M03894_2.00
Drosophila melanogaster
VATTVGTCACGS

SCGTGACBAATB
SELEX
Nitta et al.(2015)
prd_1
0.824 0.824
prd
M03895_2.00
Drosophila melanogaster
NRATCRATYN

NRATYGATYN
SELEX
Nitta et al.(2015)
prd_2
0.824 0.824
prd
M06555_2.00
Drosophila melanogaster
HSWAACNGH

DCNGTTWSD
B1H
Mathelier et al.(2014)
MA0239.1
0.824 0.824
prd
M09684_2.00
Drosophila melanogaster
HMVNTHHKWMACGS

SCGTKWMDDANBKD
Misc
Kulakovskiy et al.(2009)
prd
0.824 0.824
prd
M10818_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$PRD_Q6
0.824 0.824
gsb-n
M03888_2.00
Drosophila melanogaster
SCGTRWCKAATB

VATTMGWYACGS
SELEX
Nitta et al.(2015)
gsb-n_1
0.808 0.808
Pax7
M00541_2.00
Mus musculus
NNVATTWN

NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.775 0.775
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA

TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.775 0.775
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA

TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.775 0.775
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR

YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.775 0.775
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN

NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.775 0.775
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.775 0.775
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN

NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.775 0.775
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.775 0.775
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.775 0.775
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN

NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.775 0.775
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN

NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.775 0.775
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA

TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.775 0.775
Pax7
M09588_2.00
Mus musculus
TAATTGATTW

WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.775 0.775
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN

NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.775 0.775
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN

NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.775 0.775
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.775 0.775
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN

NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.775 0.775
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.775 0.775
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.775 0.775
PAX3
M00358_2.00
Homo sapiens
NRTNNNN

NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.769 0.769
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA

TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.769 0.769
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.769 0.769
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST

ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.769 0.769
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN

NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.769 0.769
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN

NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.769 0.769
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN

NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.769 0.769
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN

NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.769 0.769
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM

KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.769 0.769
PAX3
M10817_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.769 0.769
PAX3
M00359_2.00
Homo sapiens
NTAATYRV

BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.769 0.769
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN

NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.769 0.769
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN

NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.769 0.769
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN

NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.769 0.769
PAX3
M00352_2.00
Homo sapiens
VNTAATYR

YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.764 0.764
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN

NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.764 0.764
PAX3
M00354_2.00
Homo sapiens
NNNRYNN

NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.764 0.764
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.764 0.764
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN

NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.764 0.764
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.764 0.764
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0193399 Paired box 19 143
FBpp0193399 Homeodomain 186 242

Links

Other Homeodomain,Paired box family TFs
Other Drosophila sechellia TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BZIP17 Arabidopsis thaliana AT2G40950 D 0.000
chr1.CM0269.100.nd Lotus japonicus chr1.CM0269.100.nd I 0.000
Eucgr.A02199 Eucalyptus grandis Eucgr.A02199 I 0.000
Ciclev10011169m.g Citrus clementina Ciclev10011169m.g I 0.000
Carubv10022722m.g Capsella rubella Carubv10022722m.g I 0.000
Cagra.1642s0060 Capsella grandiflora Cagra.1642s0060 I 0.000
Bostr.9345s0037 Boechera stricta Bostr.9345s0037 I 0.000
Aquca_009_00077 Aquilegia coerulea Aquca_009_00077 I 0.000
mgf013640m Mimulus guttatus mgf013640m I 0.000
mgf002378m Mimulus guttatus mgf002378m I 0.000
Cucsa.337510 Cucumis sativus Cucsa.337510 I 0.000
cassava31134.valid.m1 Manihot esculenta cassava31134.valid.m1 I 0.000
29940.m000398 Ricinus communis 29940.m000398 I 0.000
Pm016493 Prunus mume Pm016493 I 0.000
Cla017717 Citrullus lanatus Cla017717 I 0.000
evm.TU.supercontig_92.68 Carica papaya evm.TU.supercontig_92.68 I 0.000
gene03633-v1.0-hybrid Fragaria vesca gene03633-v1.0-hybrid I 0.000
Gorai.013G000800 Gossypium raimondii Gorai.013G000800 I 0.000
PK07115.1 Cannabis sativa PK07115.1 I 0.000
Thhalv10016317m.g Eutrema salsugineum Thhalv10016317m.g I 0.000
SapurV1A.0159s0210 Salix purpurea SapurV1A.0159s0210 I 0.000
Pavir.J00385 Panicum virgatum Pavir.J00385 I 0.000
orange1.1g035544m.g Citrus sinensis orange1.1g035544m.g I 0.000
MDP0000299504 Malus domestica MDP0000299504 I 0.000
MDP0000270677 Malus domestica MDP0000270677 I 0.000
MDP0000180785 Malus domestica MDP0000180785 I 0.000
MDP0000138811 Malus domestica MDP0000138811 I 0.000
Lus10038995.g Linum usitatissimum Lus10038995.g I 0.000
Lus10027290.g Linum usitatissimum Lus10027290.g I 0.000
Lus10012104.g Linum usitatissimum Lus10012104.g I 0.000
Lus10010440.g Linum usitatissimum Lus10010440.g I 0.000
Ca_08103 Cicer arietinum Ca_08103 I 0.000
VIT_08s0040g00870 Vitis vinifera VIT_08s0040g00870 I 0.000
MLOC_42759 Hordeum vulgare MLOC_42759 I 0.000
LPERR05G13000 Leersia perrieri LPERR05G13000 I 0.000
GSMUA_Achr11G25190_001 Musa acuminata GSMUA_Achr11G25190_001 I 0.000
GSMUA_Achr10G01440_001 Musa acuminata GSMUA_Achr10G01440_001 I 0.000
GRMZM2G045236 Zea mays GRMZM2G045236 I 0.000
GLYMA19G30681 Glycine max GLYMA19G30681 I 0.000
GLYMA03G27865 Glycine max GLYMA03G27865 I 0.000
F775_10026 Aegilops tauschii F775_10026 I 0.000
BRADI2G25400 Brachypodium distachyon BRADI2G25400 I 0.000
Bra016959 Brassica rapa Bra016959 I 0.000
Bo4g190610 Brassica oleracea Bo4g190610 I 0.000
Bo4g012880 Brassica oleracea Bo4g012880 I 0.000
BGIOSGA018059 Oryza indica BGIOSGA018059 I 0.000
MTR_7g088890 Medicago truncatula MTR_7g088890 I 0.000
OB05G24300 Oryza brachyantha OB05G24300 I 0.000
OGLUM05G17320 Oryza glumaepatula OGLUM05G17320 I 0.000
TRIUR3_02784 Triticum urartu TRIUR3_02784 I 0.000
TCM_023889 Theobroma cacao TCM_023889 I 0.000
Si021442m.g Setaria italica Si021442m.g I 0.000
BZIP17 Arabidopsis lyrata scaffold_402899.1 I 0.000
Sb09g020320 Sorghum bicolor Sb09g020320 I 0.000
PRUPE_ppa002181mg Prunus persica PRUPE_ppa002181mg I 0.000
POPTR_0016s03220 Populus trichocarpa POPTR_0016s03220 I 0.000
POPTR_0006s03300 Populus trichocarpa POPTR_0006s03300 I 0.000
BZIP39 Oryza sativa OS05G0411300 I 0.000
ORUFI05G17550 Oryza rufipogon ORUFI05G17550 I 0.000
ORGLA05G0141100 Oryza glaberrima ORGLA05G0141100 I 0.000
OPUNC05G14460 Oryza punctata OPUNC05G14460 I 0.000
ONIVA05G17010 Oryza nivara ONIVA05G17010 I 0.000
AMTR_s00101p00121930 Amborella trichopoda AMTR_s00101p00121930 I 0.000