TC006788 (Tribolium castaneum)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
TC006788 T237667_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gsb-n
M03888_2.00
Drosophila melanogaster
SCGTRWCKAATB

VATTMGWYACGS
SELEX
Nitta et al.(2015)
gsb-n_1
0.852 0.852
gsb
M03889_2.00
Drosophila melanogaster
RATTMGTCACGSN

NSCGTGACKAATY
SELEX
Nitta et al.(2015)
gsb_1
0.841 0.841
gsb
M03890_2.00
Drosophila melanogaster
NNNAATCRATTWNN

NNWAATYGATTNNN
SELEX
Nitta et al.(2015)
gsb_2
0.841 0.841
gsb
M03891_2.00
Drosophila melanogaster
RTBDMTAATTGATTD

HAATCAATTAKHVAY
SELEX
Nitta et al.(2015)
gsb_3
0.841 0.841
gsb
M03892_2.00
Drosophila melanogaster
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
gsb_4
0.841 0.841
gsb
M03893_2.00
Drosophila melanogaster
NSCGTGACKAATBV

BVATTMGTCACGSN
SELEX
Nitta et al.(2015)
gsb_5
0.841 0.841
Pax7
M00541_2.00
Mus musculus
NNVATTWN

NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.830 0.830
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA

TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.830 0.830
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA

TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.830 0.830
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR

YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.830 0.830
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN

NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.830 0.830
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.830 0.830
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN

NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.830 0.830
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.830 0.830
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.830 0.830
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN

NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.830 0.830
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN

NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.830 0.830
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA

TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.830 0.830
Pax7
M09588_2.00
Mus musculus
TAATTGATTW

WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.830 0.830
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN

NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.830 0.830
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN

NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.830 0.830
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.830 0.830
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN

NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.830 0.830
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.830 0.830
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.830 0.830
prd
M03894_2.00
Drosophila melanogaster
VATTVGTCACGS

SCGTGACBAATB
SELEX
Nitta et al.(2015)
prd_1
0.819 0.819
prd
M03895_2.00
Drosophila melanogaster
NRATCRATYN

NRATYGATYN
SELEX
Nitta et al.(2015)
prd_2
0.819 0.819
prd
M06555_2.00
Drosophila melanogaster
HSWAACNGH

DCNGTTWSD
B1H
Mathelier et al.(2014)
MA0239.1
0.819 0.819
prd
M09684_2.00
Drosophila melanogaster
HMVNTHHKWMACGS

SCGTKWMDDANBKD
Misc
Kulakovskiy et al.(2009)
prd
0.819 0.819
prd
M10818_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$PRD_Q6
0.819 0.819
PAX3
M00358_2.00
Homo sapiens
NRTNNNN

NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.813 0.813
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA

TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.813 0.813
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.813 0.813
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST

ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.813 0.813
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN

NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.813 0.813
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN

NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.813 0.813
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN

NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.813 0.813
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN

NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.813 0.813
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM

KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.813 0.813
PAX3
M10817_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.813 0.813
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN

NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.813 0.813
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN

NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.813 0.813
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN

NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.813 0.813
PAX3
M00352_2.00
Homo sapiens
VNTAATYR

YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.808 0.808
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN

NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.808 0.808
PAX3
M00354_2.00
Homo sapiens
NNNRYNN

NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.808 0.808
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.808 0.808
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN

NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.808 0.808
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.808 0.808
PAX3
M00359_2.00
Homo sapiens
NTAATYRV

BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TC006788-PA Paired box 19 143
TC006788-PA Homeodomain 185 241

Links

Other Homeodomain,Paired box family TFs
Other Tribolium castaneum TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BBA_05485 Beauveria bassiana BBA_05485 N 0.000
CCM_04546 Cordyceps militaris CCM_04546 N 0.000
CFIO01_05472 Colletotrichum fioriniae CFIO01_05472 N 0.000
CGGC5_3303 Colletotrichum gloeosporioides CGGC5_3303 N 0.000
CH063_03141 Colletotrichum higginsianum CH063_03141 N 0.000
CPUR_00280 Claviceps purpurea CPUR_00280 N 0.000
CSUB01_00631 Colletotrichum sublineola CSUB01_00631 N 0.000
e_gw1.3.1536.1 Nectria haematococca e_gw1.3.1536.1 N 0.000
FFUJ_13495 Fusarium fujikuroi FFUJ_13495 N 0.000
FGRRES_06262 Fusarium graminearum FGRRES_06262 N 0.000
FOXG_08011 Fusarium oxysporum FOXG_08011 N 0.000
FPSE_00975 Fusarium pseudograminearum FPSE_00975 N 0.000
FVEG_04932 Fusarium verticillioides FVEG_04932 N 0.000
GLRG_05190 Colletotrichum graminicola GLRG_05190 N 0.000
MAC_06537 Metarhizium acridum MAC_06537 N 0.000
MAM_01033 Metarhizium album MAM_01033 N 0.000
MANI_110599 Metarhizium anisopliae MANI_110599 N 0.000
MAPG_10854 Magnaporthe poae MAPG_10854 N 0.000
MBM_00505 Marssonina brunnea MBM_00505 N 0.000
MBR_05191 Metarhizium brunneum MBR_05191 N 0.000
MGU_01481 Metarhizium guizhouense MGU_01481 N 0.000
NechaG37658 Fusarium solani NechaG37658 N 0.000
OCS_04571 Ophiocordyceps sinensis OCS_04571 N 0.000
TRIATDRAFT_213671 Trichoderma atroviride TRIATDRAFT_213671 N 0.000
TRIREDRAFT_21255 Trichoderma reesei TRIREDRAFT_21255 N 0.000
TRIVIDRAFT_30070 Trichoderma virens TRIVIDRAFT_30070 N 0.000
UV8b_706 Ustilaginoidea virens UV8b_706 N 0.000
VHEMI00669 Torrubiella hemipterigena VHEMI00669 N 0.000
X797_006994 Metarhizium robertsii X797_006994 N 0.000