gene23802-v1.0-hybrid (Fragaria vesca)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 gene23802-v1.0-hybrid T243162_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.542 0.885
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA

TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.474 0.747
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.474 0.747
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA

TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.448 0.724
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG

CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.448 0.724
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.440 0.701
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA

TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.414 0.655
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA

TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.414 0.655
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB

VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.408 0.621
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA

TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.408 0.621
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA

TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.406 0.632
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN

NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.406 0.632
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW

WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.394 0.632
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA

TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.394 0.632
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV

BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.386 0.598
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN

NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.386 0.598
HSFC1
M00868_2.00
Arabidopsis thaliana
NDTCBNNN

NNNVGAHN
PBM
Franco-Zorrilla et al.(2014)
HSFC1
0.379 0.598
HSFC1
M06943_2.00
Arabidopsis thaliana
GAASNTTCTAG

CTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFC1_col_a
0.379 0.598
HSFC1
M06944_2.00
Arabidopsis thaliana
RGAASNTTCTAGAANVW

WBNTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a
0.379 0.598
HSF1
M03329_2.00
Homo sapiens
GAANVTTCBVGAA

TTCBVGAABNTTC
SELEX
Jolma et al.(2013)
HSF1_1
0.322 0.494
HSF1
M03330_2.00
Homo sapiens
GAANRTTCBAGAA

TTCTVGAAYNTTC
SELEX
Jolma et al.(2013)
HSF1_2
0.322 0.494
HSF1
M05523_2.00
Homo sapiens
VGAABVTTCBVGAWN

NWTCBVGAABVTTCB
SELEX
Yin et al.(2017)
HSF1_eDBD_HT-SELEX
0.322 0.494
HSF1
M05525_2.00
Homo sapiens
VGAANRTTCKVGAAN

NTTCBMGAAYNTTCB
SELEX
Yin et al.(2017)
HSF1_FL_HT-SELEX
0.322 0.494
HSF1
M07977_2.00
Homo sapiens
GDCSYGGGTTCRADYCCC

GGGRHTYGAACCCRSGHC
ChIP-seq
Gerstein et al.(2012)
HepG2_HSF1_Stanford
0.322 0.494
HSF1
M09230_2.00
Homo sapiens
NRGAANNTTCYRGAA

TTCYRGAANNTTCYN
Misc
Kulakovskiy et al.(2013)
HSF1_HUMAN.H11MO.0.A
0.322 0.494
Hsf1
M09232_2.00
Mus musculus
NRGAANNTTCYRGAA

TTCYRGAANNTTCYN
Misc
Kulakovskiy et al.(2013)
HSF1_MOUSE.H11MO.0.A
0.322 0.494
HSF1
M09592_2.00
Homo sapiens
NNBBCYRGAANNTTCYRGVV

BBCYRGAANNTTCYRGVVNN
Misc
Heinz et al.(2010)
HepG2-HSF1_GSE31477
0.322 0.494
Hsf1
M09593_2.00
Mus musculus
NRGAANNTTCYRGAA

TTCYRGAANNTTCYN
Misc
Heinz et al.(2010)
Striatum-HSF1_GSE38000
0.322 0.494
HSF1
M10863_2.00
Homo sapiens
NGAAHNTTCY

RGAANDTTCN
Transfac
Matys et al.(2006)
V$HSF1_01
0.322 0.494
HSF1
M10864_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF1_Q5_01
0.322 0.494
HSF1
M10865_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF1_Q5
0.322 0.494
HSF1
M10866_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF1_Q6_01
0.322 0.494
HSF1
M10867_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF1_Q6
0.322 0.494
HSF1
M10868_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF_Q6
0.322 0.494
HSF1
M05524_2.00
Homo sapiens
RGAANRTTCYRGAWN

NWTCYRGAAYNTTCY
SELEX
Yin et al.(2017)
HSF1_eDBD_Methyl-HT-SELEX
0.322 0.494
HSF1
M05526_2.00
Homo sapiens
RGAANVTTCYRGAWN

NWTCYRGAABNTTCY
SELEX
Yin et al.(2017)
HSF1_FL_Methyl-HT-SELEX
0.322 0.494
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna23802.1-v1.0-hybrid HSF 14 104

Links

Other HSF family TFs
Other Fragaria vesca TFs

1537 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000019750 Ailuropoda melanoleuca ENSAMEG00000019750 I 0.000
ENSAPLG00000002367 Anas platyrhynchos ENSAPLG00000002367 I 0.000
ZBTB18 Anolis carolinensis ENSACAG00000004296 I 0.000
Afo_R000236 Aptenodytes forsteri Afo_R000236 I 0.000
Afo_R004692 Aptenodytes forsteri Afo_R004692 I 0.000
ENSAMXG00000002993 Astyanax mexicanus ENSAMXG00000002993 I 0.000
ENSBTAP00000000497-D1 Bos grunniens ENSBTAP00000000497-D1 I 0.000
ZBTB18 Bos taurus ENSBTAG00000000385 I 0.000
Brh_R000160 Buceros rhinoceros Brh_R000160 I 0.000
Brh_R011012 Buceros rhinoceros Brh_R011012 I 0.000
ZBTB18 Callithrix jacchus ENSCJAG00000017087 I 0.000
Aan_R011644 Calypte anna Aan_R011644 I 0.000
Aan_R007004 Calypte anna Aan_R007004 I 0.000
ENSCPOG00000023254 Cavia porcellus ENSCPOG00000023254 I 0.000
Cmyd_10012301 Chelonia mydas Cmyd_10012301 I 0.000
Cmyd_10016351 Chelonia mydas Cmyd_10016351 I 0.000
zbtb18 Danio rerio ENSDARG00000028228 I 0.000
ZBTB18 Dasypus novemcinctus ENSDNOG00000009334 I 0.000
ENSDORG00000000569 Dipodomys ordii ENSDORG00000000569 I 0.000
ZBTB18 Equus caballus ENSECAG00000018829 I 0.000
ZBTB18 Erinaceus europaeus ENSEEUG00000014181 I 0.000
ENSFCAG00000026731 Felis catus ENSFCAG00000026731 I 0.000
ENSFALG00000014898 Ficedula albicollis ENSFALG00000014898 I 0.000
ENSGMOG00000018718 Gadus morhua ENSGMOG00000018718 I 0.000
ZBTB18 Gallus gallus ENSGALG00000010705 I 0.000
zbtb18 Gasterosteus aculeatus ENSGACG00000010518 I 0.000
Gfo_R006792 Geospiza fortis Gfo_R006792 I 0.000
Gfo_R011040 Geospiza fortis Gfo_R011040 I 0.000
ZBTB18 Gorilla gorilla ENSGGOG00000028442 I 0.000
ZBTB18 Homo sapiens ENSG00000179456 D 0.000
ENSSTOG00000004290 Ictidomys tridecemlineatus ENSSTOG00000004290 I 0.000
ENSLACG00000009889 Latimeria chalumnae ENSLACG00000009889 I 0.000
ENSLOCG00000017349 Lepisosteus oculatus ENSLOCG00000017349 I 0.000
ZBTB18 Loxodonta africana ENSLAFG00000002879 I 0.000
ENSP00000351539 Macaca fascicularis ENSP00000351539 I 0.000
ZBTB18 Macaca mulatta ENSMMUG00000015664 I 0.000
ENSMEUG00000009369 Macropus eugenii ENSMEUG00000009369 I 0.000
ZBTB18 Meleagris gallopavo ENSMGAG00000011476 I 0.000
ZBTB18 Microcebus murinus ENSMICG00000007600 I 0.000
ZBTB18 Monodelphis domestica ENSMODG00000006570 I 0.000
ENSMPUG00000015734 Mustela putorius furo ENSMPUG00000015734 I 0.000
Zbtb18 Mus musculus ENSMUSG00000063659 I 0.000
Myotis_brandtii_ZNF238_10003031 Myotis brandtii Myotis_brandtii_ZNF238_10003031 I 0.000
ZBTB18 Myotis lucifugus ENSMLUG00000011285 I 0.000
ENSNLEG00000003981 Nomascus leucogenys ENSNLEG00000003981 I 0.000
ENSONIG00000000862 Oreochromis niloticus ENSONIG00000000862 I 0.000
ZBTB18 Ornithorhynchus anatinus ENSOANG00000010257 I 0.000
ZBTB18 Oryctolagus cuniculus ENSOCUG00000007968 I 0.000
zbtb18 Oryzias latipes ENSORLG00000004823 I 0.000
ZBTB18 Otolemur garnettii ENSOGAG00000013580 I 0.000
ENSOARG00000005939 Ovis aries ENSOARG00000005939 I 0.000
ZBTB18 Pan troglodytes ENSPTRG00000002175 I 0.000
ENSPANG00000021934 Papio anubis ENSPANG00000021934 I 0.000
ENSPSIG00000000487 Pelodiscus sinensis ENSPSIG00000000487 I 0.000
ENSPFOG00000022080 Poecilia formosa ENSPFOG00000022080 I 0.000
Pvit_01078 Pogona vitticeps Pvit_01078 I 0.000
ENSPPYG00000000059 Pongo abelii ENSPPYG00000000059 I 0.000
ZBTB18 Pteropus vampyrus ENSPVAG00000011441 I 0.000
Zfp238 Rattus norvegicus ENSRNOG00000004423 I 0.000
ENSSHAG00000008659 Sarcophilus harrisii ENSSHAG00000008659 I 0.000
ZBTB18 Sorex araneus ENSSARG00000002984 I 0.000
ENSSSCG00000030070 Sus scrofa ENSSSCG00000030070 I 0.000
ZBTB18 Taeniopygia guttata ENSTGUG00000008247 I 0.000
zbtb18 Takifugu rubripes ENSTRUG00000000952 I 0.000
ENSTSYG00000004607 Tarsius syrichta ENSTSYG00000004607 I 0.000
zbtb18 Tetraodon nigroviridis ENSTNIG00000000430 I 0.000
ZBTB18 Tursiops truncatus ENSTTRG00000000615 I 0.000
zbtb18.L Xenopus laevis XB-GENE-1003548 I 0.000
AAH70718 Xenopus laevis AAH70718 I 0.000
znf238.2.L Xenopus laevis XB-GENE-1219070 I 0.000
zbtb18 Xenopus tropicalis XB-GENE-1003542 I 0.000
ENSXMAG00000018241 Xiphophorus maculatus ENSXMAG00000018241 I 0.000