Pavir.Da00715 (Panicum virgatum)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Pavir.Da00715 T243329_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.362 0.596
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.358 0.632
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA

TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.354 0.667
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN

NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.354 0.667
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW

WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.333 0.596
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA

TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.333 0.596
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA

TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.329 0.579
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA

TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.329 0.579
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA

TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.327 0.596
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.327 0.596
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV

BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.327 0.614
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN

NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.327 0.614
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB

VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.324 0.632
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA

TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.324 0.632
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00715.1.p HSF 53 112

Links

Other HSF family TFs
Other Panicum virgatum TFs

1130 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
estExt_Genewise1Plus.C_chr_41111 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_41111 N 0.000
SBOR_9471 Sclerotinia borealis SBOR_9471 N 0.000
S40288_07815 Stachybotrys chartarum S40288_07815 N 0.000
S40285_04138 Stachybotrys chlorohalonata S40285_04138 N 0.000
PV11_05484 Exophiala sideris PV11_05484 N 0.000
PV09_04501 Verruconis gallopava PV09_04501 N 0.000
PV08_07688 Exophiala spinifera PV08_07688 N 0.000
PV07_05366 Cladophialophora immunda PV07_05366 N 0.000
OIDMADRAFT_163883 Oidiodendron maius OIDMADRAFT_163883 N 0.000
NechaG32416 Fusarium solani NechaG32416 N 0.000
SEPMUDRAFT_146449 Sphaerulina musiva SEPMUDRAFT_146449 N 0.000
SETTUDRAFT_85025 Setosphaeria turcica SETTUDRAFT_85025 N 0.000
SNOG_14338 Phaeosphaeria nodorum SNOG_14338 N 0.000
estExt_Genewise1.C_110361 Cochliobolus heterostrophus C5 estExt_Genewise1.C_110361 N 0.000
e_gw1.18.1597.1 Nectria haematococca e_gw1.18.1597.1 N 0.000
e_gw1.1.55.1 Mycosphaerella fijiensis e_gw1.1.55.1 N 0.000
Z519_00836 Cladophialophora bantiana Z519_00836 N 0.000
Z518_07282 Rhinocladiella mackenziei Z518_07282 N 0.000
W97_07908 Coniosporium apollinis W97_07908 N 0.000
VHEMI06672 Torrubiella hemipterigena VHEMI06672 N 0.000
UCRNP2_9340 Neofusicoccum parvum UCRNP2_9340 N 0.000
SS1G_02435 Sclerotinia sclerotiorum SS1G_02435 N 0.000
Mycgr3G71341 Zymoseptoria tritici Mycgr3G71341 N 0.000
MYCFIDRAFT_28820 Pseudocercospora fijiensis MYCFIDRAFT_28820 N 0.000
COCCADRAFT_6869 Bipolaris zeicola COCCADRAFT_6869 N 0.000
COCC4DRAFT_21834 Bipolaris maydis COCC4DRAFT_21834 N 0.000
BGHDH14_bgh02194 Blumeria graminis BGHDH14_bgh02194 N 0.000
Bcin13g04140 Botrytis cinerea Bcin13g04140 N 0.000
BAUCODRAFT_101507 Baudoinia compniacensis BAUCODRAFT_101507 N 0.000
AUEXF2481DRAFT_2325 Aureobasidium subglaciale AUEXF2481DRAFT_2325 N 0.000
A1O5_00887 Cladophialophora psammophila A1O5_00887 N 0.000
A1O3_01643 Capronia epimyces A1O3_01643 N 0.000
A1O1_04405 Capronia coronata A1O1_04405 N 0.000
COCMIDRAFT_8551 Bipolaris oryzae COCMIDRAFT_8551 N 0.000
COCVIDRAFT_96750 Bipolaris victoriae COCVIDRAFT_96750 N 0.000
DOTSEDRAFT_165097 Dothistroma septosporum DOTSEDRAFT_165097 N 0.000
MPH_11315 Macrophomina phaseolina MPH_11315 N 0.000
MBM_08112 Marssonina brunnea MBM_08112 N 0.000
M7I_5209 Glarea lozoyensis M7I_5209 N 0.000
M438DRAFT_353130 Aureobasidium pullulans M438DRAFT_353130 N 0.000
M437DRAFT_55194 Aureobasidium melanogenum M437DRAFT_55194 N 0.000
HMPREF1541_05733 Cyphellophora europaea HMPREF1541_05733 N 0.000
HMPREF1120_08054 Exophiala dermatitidis HMPREF1120_08054 N 0.000
G647_09184 Cladophialophora carrionii G647_09184 N 0.000
EV44_g0882 Erysiphe necator EV44_g0882 N 0.000
SNOG_14338 Stagonospora nodorum SNOG_14338 N 0.000