LjSGA_138513.1.1 (Lotus japonicus)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 LjSGA_138513.1.1 T243581_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.384 0.493
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.340 0.388
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA

TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.330 0.433
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA

TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.330 0.433
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_138513.1.1 HSF 16 92

Links

Other HSF family TFs
Other Lotus japonicus TFs

Invalid Input OrderBy

425 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action