CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TVAG_293580
(
Trichomonas vaginalis
)
IBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10416 (IBD)
IPR018845
TVAG_293580
T243809_2.00
EuPathDB (2015-Mar-30)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TVAG_293580
M02251_2.00
Trichomonas vaginalis
NNNGRHCRNN
NNYGDYCNNN
PBM
Weirauch et al.(2014)
pTH8238
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.700
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02251_2.00
IBD
17
144
LRDREGYLELRTMLTSPACKNRRNKSVETFVDVVETIKAFVMRDDSDDLQRGIVCGMYWVGEDLAINTRQLRILLQKCKSSINGSLQMIGYASPTDANEASSILNKLFPFWKDNFKEMRQWTIRRKAK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TVAG_293580
IBD
17
144
LRDREGYLELRTMLTSPACKNRRNKSVETFVDVVETIKAFVMRDDSDDLQRGIVCGMYWVGEDLAINTRQLRILLQKCKSSINGSLQMIGYASPTDANEASSILNKLFPFWKDNFKEMRQWTIRRKAK
Links
Other
IBD
family TFs
Other
Trichomonas vaginalis
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TVAG_466130
Trichomonas vaginalis
TVAG_466130
I
0.866