CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
irf2
(
Xenopus tropicalis
)
IRF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00605 (IRF)
IPR001346
XB-GENE-942910
T244627_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Irf2
M00805_2.00
Mus musculus
NDWNHGAAAV
BTTTCDNWHN
PBM
Weirauch et al.(2013)
pTH2835
0.924
0.924
IRF2
M05545_2.00
Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN
SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX
0.924
0.924
IRF2
M02691_2.00
Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS
SELEX
Mathelier et al.(2014)
MA0051.1
0.924
0.924
IRF2
M09237_2.00
Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN
Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A
0.924
0.924
Irf2
M09245_2.00
Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN
Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B
0.924
0.924
IRF2
M09596_2.00
Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN
Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985
0.924
0.924
IRF2
M10892_2.00
Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC
Transfac
Matys et al.(2006)
V$IRF2_01
0.924
0.924
IRF2
M10893_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF2_Q6
0.924
0.924
IRF2
M05546_2.00
Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN
SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX
0.924
0.924
IRF1
M08142_2.00
Homo sapiens
RWANNGAAASYGAAASYRNNN
NNNYRSTTTCRSTTTCNNTWY
ChIP-seq
Mathelier et al.(2014)
MA0050.2
0.752
0.752
IRF1
M09233_2.00
Homo sapiens
NRAANNGAAASWGAAASHRN
NYDSTTTCWSTTTCNNTTYN
Misc
Kulakovskiy et al.(2013)
IRF1_HUMAN.H11MO.0.A
0.752
0.752
Irf1
M09242_2.00
Mus musculus
VRAANNGAAASYGAAASYVN
NBRSTTTCRSTTTCNNTTYB
Misc
Kulakovskiy et al.(2013)
IRF1_MOUSE.H11MO.0.A
0.752
0.752
IRF1
M09594_2.00
Homo sapiens
GAAASTGAAASY
RSTTTCASTTTC
Misc
Heinz et al.(2010)
PBMC-IRF1_GSE43036
0.752
0.752
IRF1
M10879_2.00
Homo sapiens
SAAAASYGAAASY
RSTTTCRSTTTTS
Transfac
Matys et al.(2006)
V$IRF1_01
0.752
0.752
IRF1
M10880_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF1_03
0.752
0.752
IRF1
M10881_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF1_Q5
0.752
0.752
IRF1
M10882_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF1_Q6
0.752
0.752
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH80892
IRF
7
112
RMRPWLEEQINKDLIPGLKWLNKEKKIFQIPWMHAARHGWDVDKDAPLFRNWAIHTGKYQPGIDKPDPKTWKANFRCAMNSLPDIEEVKDKSMKKGNNAFRVYRMI
CAJ82600
IRF
7
112
RMRPWLEEQINKDLIPGLKWLNKEKKIFQIPWMHAARHGWDVDKDAPLFRNWAIHTGKYQPGIDKPDPKTWKANFRCAMNSLPDIEEVKDKSMKKGNNAFRVYRMI
Links
Other
IRF
family TFs
Other
Xenopus tropicalis
TFs
134 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy