LBD16 (Arabidopsis thaliana)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 AT2G42430 T244881_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
(Direct) (Direct)
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
(Direct) (Direct)
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.747 0.747
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.747 0.747
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.727 0.727
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00870_2.00 LOB 15 114

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G42430.1 LOB 15 114

Links

Other LOB family TFs
Other Arabidopsis thaliana TFs

342 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00004p00067720 Amborella trichopoda AMTR_s00004p00067720 N 0.000
BGIOSGA010118 Oryza indica BGIOSGA010118 N 0.000
BRADI1G13207 Brachypodium distachyon BRADI1G13207 N 0.000
cassava10020.m1 Manihot esculenta cassava10020.m1 N 0.000
Ciclev10017173m.g Citrus clementina Ciclev10017173m.g N 0.000
Eucgr.J01756 Eucalyptus grandis Eucgr.J01756 N 0.000
F775_42487 Aegilops tauschii F775_42487 N 0.000
gene01596-v1.0-hybrid Fragaria vesca gene01596-v1.0-hybrid N 0.000
GRMZM2G149219 Zea mays GRMZM2G149219 N 0.000
GRMZM2G161411 Zea mays GRMZM2G161411 N 0.000
LPERR03G23380 Leersia perrieri LPERR03G23380 N 0.000
MLOC_16746 Hordeum vulgare MLOC_16746 N 0.000
MLOC_19031 Hordeum vulgare MLOC_19031 I 0.000
OB03G35830 Oryza brachyantha OB03G35830 N 0.000
OBART03G28190 Oryza barthii OBART03G28190 N 0.000
OGLUM03G28820 Oryza glumaepatula OGLUM03G28820 N 0.000
OMERI03G24810 Oryza meridionalis OMERI03G24810 N 0.000
ONIVA03G29220 Oryza nivara ONIVA03G29220 N 0.000
OPUNC03G25700 Oryza punctata OPUNC03G25700 N 0.000
orange1.1g032690m.g Citrus sinensis orange1.1g032690m.g N 0.000
ORGLA03G0260500 Oryza glaberrima ORGLA03G0260500 N 0.000
ORUFI03G29320 Oryza rufipogon ORUFI03G29320 N 0.000
OS03G0657400 Oryza sativa OS03G0657400 N 0.000
Pavir.J22786 Panicum virgatum Pavir.J22786 N 0.000
POPTR_0003s20860 Populus trichocarpa POPTR_0003s20860 N 0.000
SapurV1A.0081s0610 Salix purpurea SapurV1A.0081s0610 N 0.000
Sb01g012870 Sorghum bicolor Sb01g012870 N 0.000
Si038001m.g Setaria italica Si038001m.g N 0.000
Si038955m.g Setaria italica Si038955m.g N 0.000
TRAES3BF090100100CFD_g Triticum aestivum TRAES3BF090100100CFD_g I 0.000
Traes_3AL_3160E1F30 Triticum aestivum Traes_3AL_3160E1F30 I 0.000
Traes_4AL_234E1CDF6 Triticum aestivum Traes_4AL_234E1CDF6 N 0.000
Traes_4DS_CFC487CE5 Triticum aestivum Traes_4DS_CFC487CE5 N 0.000
TRIUR3_34281 Triticum urartu TRIUR3_34281 I 0.000