Bra018335 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra018335 T245055_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.778 0.778
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.778 0.778
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra018335.1-P LOB 8 106

Links

Other LOB family TFs
Other Brassica rapa TFs

353 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL001879 Aedes aegypti AAEL001879 N 0.000
ASIS007532 Anopheles sinensis ASIS007532 N 0.000
AQUA002652 Anopheles quadriannulatus AQUA002652 N 0.000
AMIN009685 Anopheles minimus AMIN009685 N 0.000
AMEM013356 Anopheles merus AMEM013356 N 0.000
AMEC017850 Anopheles melas AMEC017850 N 0.000
AMAM022534 Anopheles maculatus AMAM022534 N 0.000
AFUN006197 Anopheles funestus AFUN006197 N 0.000
AFAF015431 Anopheles farauti AFAF015431 N 0.000
AEPI005742 Anopheles epiroticus AEPI005742 N 0.000
ACUA019431 Anopheles culicifacies ACUA019431 N 0.000
ACOM027189 Anopheles coluzzii ACOM027189 N 0.000
ACHR007110 Anopheles christyi ACHR007110 N 0.000
AATE007927 Anopheles atroparvus AATE007927 N 0.000
AARA008680 Anopheles arabiensis AARA008680 N 0.000
AGAP009140 Anopheles gambiae AGAP009140 N 0.000
ASTEI06180 Anopheles stephensi ASTEI06180 N 0.000