PGSC0003DMG402023851 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG402023851 T245851_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.808 0.808
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400061283 LOB 14 112

Links

Other LOB family TFs
Other Solanum tuberosum TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29729.m002278 Ricinus communis 29729.m002278 I 0.727
30169.m006340 Ricinus communis 30169.m006340 I 0.828
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.727
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.828
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.717
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.758
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.747
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.747
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
Bo4g170770 Brassica oleracea Bo4g170770 I 0.707
Bo5g021980 Brassica oleracea Bo5g021980 I 0.717
Bo7g041000 Brassica oleracea Bo7g041000 I 0.808
Bo8g105450 Brassica oleracea Bo8g105450 I 0.727
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.808
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.707
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.727
Bra014907 Brassica rapa Bra014907 I 0.808
Bra018335 Brassica rapa Bra018335 I 0.707
Bra021612 Brassica rapa Bra021612 I 0.707
Bra026042 Brassica rapa Bra026042 I 0.727
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.747
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.808
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.808
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.848
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.727
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.727
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.828
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.818
Ca_06548 Cicer arietinum Ca_06548 I 0.818
Ca_12450 Cicer arietinum Ca_12450 I 0.727
Ca_13388 Cicer arietinum Ca_13388 I 0.727
Ca_13575 Cicer arietinum Ca_13575 I 0.788
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.798
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.808
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.727
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.818
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.798
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.808
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.727
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.717
Cla005598 Citrullus lanatus Cla005598 I 0.747
Cla007354 Citrullus lanatus Cla007354 I 0.717
Cla009336 Citrullus lanatus Cla009336 I 0.788
Cla013678 Citrullus lanatus Cla013678 I 0.838
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.838
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.717
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.798
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.758
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.727
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.798
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.788
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.707
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.707
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.747
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.838
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.717
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.747
F775_08326 Aegilops tauschii F775_08326 I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.818
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.737
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.737
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.838
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.727
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.808
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.798
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.798
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.727
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.798
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.768
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.717
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.808
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.808
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.717
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.808
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.788
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.727
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.808
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.717
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.727
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.737
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.747
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.737
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.758
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.758
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.737
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.727
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.727
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.747
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.727
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.717
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.707
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.758
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.758
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.737
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.818
LBD3 Arabidopsis thaliana AT1G16530 I 0.737
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.808
LBD4 Arabidopsis thaliana AT1G31320 D 0.808
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.808
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.731
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.768
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.747
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.818
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.798
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.717
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.778
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.707
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.808
MDP0000121203 Malus domestica MDP0000121203 I 0.818
MDP0000155138 Malus domestica MDP0000155138 I 0.727
MDP0000194766 Malus domestica MDP0000194766 I 0.717
MDP0000265429 Malus domestica MDP0000265429 I 0.737
MDP0000268890 Malus domestica MDP0000268890 I 0.828
MDP0000284409 Malus domestica MDP0000284409 I 0.828
MDP0000861160 Malus domestica MDP0000861160 I 0.717
mgf018189m Mimulus guttatus mgf018189m I 0.747
mgf019461m Mimulus guttatus mgf019461m I 0.727
mgf022958m Mimulus guttatus mgf022958m I 0.788
mgf026046m Mimulus guttatus mgf026046m I 0.798
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.727
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.788
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.717
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.808
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.717
OB05G14280 Oryza brachyantha OB05G14280 I 0.736
OB05G20740 Oryza brachyantha OB05G20740 I 0.747
OB11G10200 Oryza brachyantha OB11G10200 I 0.707
OB12G10480 Oryza brachyantha OB12G10480 I 0.707
OBART03G28270 Oryza barthii OBART03G28270 I 0.726
OBART05G12620 Oryza barthii OBART05G12620 I 0.737
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.758
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.747
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.744
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.758
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.747
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.758
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.747
ONIVA08G12870 Oryza nivara ONIVA08G12870 I 0.707
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.737
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.747
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.808
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.717
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.798
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.818
ORGLA01G0366500 Oryza glaberrima ORGLA01G0366500 I 0.732
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.737
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.747
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.758
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.747
OS05G0346800 Oryza sativa OS05G0346800 I 0.747
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.747
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.747
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.747
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.747
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.747
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.747
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.747
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.747
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.727
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.727
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.848
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.798
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.717
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.717
PK11564.1 Cannabis sativa PK11564.1 I 0.838
PK18922.1 Cannabis sativa PK18922.1 I 0.702
PK21617.1 Cannabis sativa PK21617.1 I 0.783
PK24688.1 Cannabis sativa PK24688.1 I 0.798
Pm000193 Prunus mume Pm000193 I 0.737
Pm011040 Prunus mume Pm011040 I 0.828
Pm018982 Prunus mume Pm018982 I 0.737
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.808
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.808
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.750
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.818
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.727
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.737
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.828
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.737
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.818
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.747
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.707
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.808
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.747
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.818
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.808
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.808
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.727
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.747
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.730
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.747
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.747
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.758
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
Si024229m.g Setaria italica Si024229m.g I 0.747
Si026864m.g Setaria italica Si026864m.g I 0.737
Si037583m.g Setaria italica Si037583m.g I 0.747
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.798
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.717
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.717
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.848
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.939
TCM_029315 Theobroma cacao TCM_029315 I 0.808
TCM_032557 Theobroma cacao TCM_032557 I 0.808
TCM_042212 Theobroma cacao TCM_042212 I 0.717
TCM_042447 Theobroma cacao TCM_042447 I 0.727
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.808
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.737
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.727
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.727
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.727
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.737
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.737
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.707
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.737
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.726
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.704
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.717