Si004575m.g (Setaria italica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Si004575m.g T246038_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.808 0.808
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si004575m LOB 69 167

Links

Other LOB family TFs
Other Setaria italica TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_24149 Aegilops tauschii F775_24149 I 0.707
F775_25790 Aegilops tauschii F775_25790 I 0.949
F775_52636 Aegilops tauschii F775_52636 I 0.869
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.869
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.859
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.818
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.869
LBD15 Arabidopsis thaliana AT2G40470 I 0.869
LBD13 Arabidopsis thaliana AT2G30340 D 0.808
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.808
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.869
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.929
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.848
Bo4g190210 Brassica oleracea Bo4g190210 I 0.859
Bo3g034980 Brassica oleracea Bo3g034980 I 0.859
Bo4g012620 Brassica oleracea Bo4g012620 I 0.859
Bo4g059520 Brassica oleracea Bo4g059520 I 0.808
Bo4g172950 Brassica oleracea Bo4g172950 I 0.818
Bo4g190140 Brassica oleracea Bo4g190140 I 0.763
Bra021627 Brassica rapa Bra021627 I 0.818
Bra016992 Brassica rapa Bra016992 I 0.838
Bra000188 Brassica rapa Bra000188 I 0.859
Bra004572 Brassica rapa Bra004572 I 0.859
Bra018320 Brassica rapa Bra018320 I 0.808
PK17019.1 Cannabis sativa PK17019.1 I 0.706
PK17217.1 Cannabis sativa PK17217.1 I 0.869
PK05388.1 Cannabis sativa PK05388.1 I 0.833
PK11564.1 Cannabis sativa PK11564.1 I 0.717
PK03716.1 Cannabis sativa PK03716.1 I 0.765
PK21617.1 Cannabis sativa PK21617.1 I 0.913
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.808
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.869
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.798
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.869
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.830
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.717
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.859
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.859
Ca_04126 Cicer arietinum Ca_04126 I 0.859
Ca_12420 Cicer arietinum Ca_12420 I 0.818
Ca_15642 Cicer arietinum Ca_15642 I 0.828
Cla013678 Citrullus lanatus Cla013678 I 0.707
Cla007391 Citrullus lanatus Cla007391 I 0.859
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.828
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.808
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.808
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.828
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.798
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.838
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.818
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.838
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.859
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.808
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.838
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.818
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.848
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.848
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.848
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.869
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.848
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.859
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.848
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.838
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.869
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.960
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.869
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.970
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.778
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.778
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.848
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.848
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.828
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.848
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.824
MDP0000167580 Malus domestica MDP0000167580 I 0.840
MDP0000268890 Malus domestica MDP0000268890 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
MDP0000278334 Malus domestica MDP0000278334 I 0.828
MDP0000155138 Malus domestica MDP0000155138 I 0.707
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.869
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.788
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.859
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.838
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.859
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.828
mgf026046m Mimulus guttatus mgf026046m I 0.727
mgf020556m Mimulus guttatus mgf020556m I 0.848
mgf011471m Mimulus guttatus mgf011471m I 0.848
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.838
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.859
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.838
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.879
OBART05G04570 Oryza barthii OBART05G04570 I 0.879
OBART01G35680 Oryza barthii OBART01G35680 I 0.970
OB01G44400 Oryza brachyantha OB01G44400 I 0.960
OB05G14280 Oryza brachyantha OB05G14280 I 0.885
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.970
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.879
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.970
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.727
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.879
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.970
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.727
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.879
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.970
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.747
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.970
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.727
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.879
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.879
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.970
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.727
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.707
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.960
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.879
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.727
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.970
OS01G0825000 Oryza sativa OS01G0825000 I 0.970
OS05G0165450 Oryza sativa OS05G0165450 I 0.879
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.737
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.727
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.990
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.879
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.737
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.869
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.980
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.712
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.758
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.828
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.838
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.798
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.848
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.818
Pm011040 Prunus mume Pm011040 I 0.707
Pm000277 Prunus mume Pm000277 I 0.828
Pm019028 Prunus mume Pm019028 I 0.764
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.848
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.828
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
29729.m002335 Ricinus communis 29729.m002335 I 0.848
29957.m001411 Ricinus communis 29957.m001411 I 0.818
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.818
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.798
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.788
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.788
Si037583m.g Setaria italica Si037583m.g I 0.737
Si026864m.g Setaria italica Si026864m.g I 0.717
Si012018m.g Setaria italica Si012018m.g I 0.889
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.818
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.808
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.838
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.798
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.838
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.808
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.879
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.980
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.708
TCM_042262 Theobroma cacao TCM_042262 I 0.848
TCM_045438 Theobroma cacao TCM_045438 I 0.859
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.869
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.869
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.939
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.869
TRIUR3_27421 Triticum urartu TRIUR3_27421 I 0.707
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.949
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.863
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.859
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.828
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.869
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.970
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.727
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.755
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707