Cucsa.362830 (Cucumis sativus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cucsa.362830 T246534_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.791 0.791
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.791 0.791
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.769 0.769
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.769 0.769
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.758 0.758
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.758 0.758
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.714 0.714
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.714 0.714
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.362830.1 LOB 29 120

Links

Other LOB family TFs
Other Cucumis sativus TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD19 Arabidopsis thaliana AT2G45410 D 0.769
LBD30 Arabidopsis thaliana AT4G00220 D 0.727
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.747
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.707
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.780
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.727
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.714
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.747
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.737
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.707
mgf020773m Mimulus guttatus mgf020773m I 0.703
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.758
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.769
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.717
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.707
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.714
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.758
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.780
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.707
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.717
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.714
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.780
mgf020735m Mimulus guttatus mgf020735m I 0.747
mgf006429m Mimulus guttatus mgf006429m I 0.707
Pm017936 Prunus mume Pm017936 I 0.758
Pm017935 Prunus mume Pm017935 I 0.798
Cla021625 Citrullus lanatus Cla021625 I 0.725
Cla007069 Citrullus lanatus Cla007069 I 0.859
Cla007068 Citrullus lanatus Cla007068 I 0.758
Ca_20429 Cicer arietinum Ca_20429 I 0.787
Ca_19598 Cicer arietinum Ca_19598 I 0.788
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.768
Pm028642 Prunus mume Pm028642 I 0.758
30174.m008897 Ricinus communis 30174.m008897 I 0.788
30174.m008898 Ricinus communis 30174.m008898 I 0.747
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.747
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.758
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.750
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.758
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.768
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.747
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.778
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.758
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.737
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.703
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.768
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.758
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.788
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.802
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.747
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.725
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.747
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.747
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.730
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.717
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.769
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.725
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.727
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.711
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.846
PK25573.1 Cannabis sativa PK25573.1 I 0.846
PK23380.1 Cannabis sativa PK23380.1 I 0.716
PK23185.1 Cannabis sativa PK23185.1 I 0.714
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.717
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.737
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.707
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.714
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.788
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.780
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.811
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.778
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.727
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.737
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.703
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.737
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.778
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.725
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.791
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.747
MDP0000429067 Malus domestica MDP0000429067 I 0.788
MDP0000254224 Malus domestica MDP0000254224 I 0.793
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.778
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.737
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.780
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.717
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.727
OB10G12360 Oryza brachyantha OB10G12360 I 0.791
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.737
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.758
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.747
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.737
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.747
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.778
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.747
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.727
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.758
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.747
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.703
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
OB03G20590 Oryza brachyantha OB03G20590 I 0.780
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.798
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.737
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.766
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.737
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.780
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.788
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.717
Bo8g092560 Brassica oleracea Bo8g092560 I 0.703
Bo4g195510 Brassica oleracea Bo4g195510 I 0.753
Bo4g024610 Brassica oleracea Bo4g024610 I 0.736
Bo2g097560 Brassica oleracea Bo2g097560 I 0.737
Bo1g153580 Brassica oleracea Bo1g153580 I 0.717
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.717
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.737
LBD20 Arabidopsis thaliana AT3G03760 I 0.780
Bo9g002160 Brassica oleracea Bo9g002160 I 0.717
Bra001087 Brassica rapa Bra001087 I 0.779
Bra008514 Brassica rapa Bra008514 I 0.737
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.780
F775_22967 Aegilops tauschii F775_22967 I 0.703
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.717
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.747
Bra040312 Brassica rapa Bra040312 I 0.747
Bra037323 Brassica rapa Bra037323 I 0.717
Bra036436 Brassica rapa Bra036436 I 0.717
Bra016877 Brassica rapa Bra016877 I 0.714
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.737
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.707
Si019578m.g Setaria italica Si019578m.g I 0.725
Si015156m.g Setaria italica Si015156m.g I 0.747
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.724
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.724
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.747
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.747
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.758
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.808
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.717
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.717
TCM_005496 Theobroma cacao TCM_005496 I 0.783
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.703
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.703
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.703
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.737
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.737
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.737
TCM_025849 Theobroma cacao TCM_025849 I 0.707
TCM_005497 Theobroma cacao TCM_005497 I 0.768
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.758
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.791
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.717
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.737
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.717
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.737
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.758
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.800
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.717
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.737
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.737
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.717
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.737
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.788
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.826
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.809
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.787
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.712
OS10G0162600 Oryza sativa OS10G0162600 I 0.717
OS03G0246900 Oryza sativa OS03G0246900 I 0.737
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.717
OBART03G10450 Oryza barthii OBART03G10450 I 0.737