Gorai.012G015900 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.012G015900 T247000_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.848 0.848
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.012G015900.1 LOB 44 142

Links

Other LOB family TFs
Other Gossypium raimondii TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_52636 Aegilops tauschii F775_52636 I 0.848
F775_25790 Aegilops tauschii F775_25790 I 0.838
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.949
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.949
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.939
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.859
LBD15 Arabidopsis thaliana AT2G40470 I 0.939
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.939
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.838
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.828
Bo3g034980 Brassica oleracea Bo3g034980 I 0.929
Bo4g012620 Brassica oleracea Bo4g012620 I 0.919
Bo4g190210 Brassica oleracea Bo4g190210 I 0.939
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
Bo4g172950 Brassica oleracea Bo4g172950 I 0.859
Bra021627 Brassica rapa Bra021627 I 0.859
Bra000188 Brassica rapa Bra000188 I 0.929
Bra004572 Brassica rapa Bra004572 I 0.919
Bra016992 Brassica rapa Bra016992 I 0.929
Bra018320 Brassica rapa Bra018320 I 0.848
PK17217.1 Cannabis sativa PK17217.1 I 0.949
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.939
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.939
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.949
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.879
Ca_12450 Cicer arietinum Ca_12450 I 0.707
Ca_15642 Cicer arietinum Ca_15642 I 0.869
Ca_12420 Cicer arietinum Ca_12420 I 0.889
Ca_04126 Cicer arietinum Ca_04126 I 0.919
Cla007391 Citrullus lanatus Cla007391 I 0.929
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.909
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.727
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.859
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.727
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.909
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.859
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.859
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.929
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.949
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.869
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.929
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.949
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.879
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.949
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.949
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.970
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.939
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.879
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.838
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.848
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.838
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.828
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.879
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.879
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.949
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.909
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
MDP0000278334 Malus domestica MDP0000278334 I 0.929
MDP0000284409 Malus domestica MDP0000284409 I 0.707
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.960
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.869
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.970
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.909
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.889
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.717
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.889
mgf026046m Mimulus guttatus mgf026046m I 0.707
mgf020556m Mimulus guttatus mgf020556m I 0.879
mgf011471m Mimulus guttatus mgf011471m I 0.879
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.909
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.889
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.889
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.869
OBART05G04570 Oryza barthii OBART05G04570 I 0.869
OBART01G35680 Oryza barthii OBART01G35680 I 0.838
OB01G44400 Oryza brachyantha OB01G44400 I 0.828
OB05G14280 Oryza brachyantha OB05G14280 I 0.788
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.838
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.869
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.869
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.838
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.838
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.869
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.838
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.758
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.869
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.838
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.869
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.838
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.828
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.869
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.838
OS01G0825000 Oryza sativa OS01G0825000 I 0.838
OS05G0165450 Oryza sativa OS05G0165450 I 0.869
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.838
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.818
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.838
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.848
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.780
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.838
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.869
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.879
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.717
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.879
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.929
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.869
Pm011040 Prunus mume Pm011040 I 0.707
Pm000277 Prunus mume Pm000277 I 0.838
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.960
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.848
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
29729.m002335 Ricinus communis 29729.m002335 I 0.949
29957.m001411 Ricinus communis 29957.m001411 I 0.879
30169.m006340 Ricinus communis 30169.m006340 I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.879
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.869
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.848
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.848
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
Si004575m.g Setaria italica Si004575m.g I 0.838
Si012018m.g Setaria italica Si012018m.g I 0.859
Si026864m.g Setaria italica Si026864m.g I 0.717
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.889
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.919
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.848
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.919
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.879
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.838
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.848
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.828
TCM_042262 Theobroma cacao TCM_042262 I 0.899
TCM_032557 Theobroma cacao TCM_032557 I 0.717
TCM_045438 Theobroma cacao TCM_045438 I 0.970
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.828
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.848
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.848
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.848
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.838
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.970
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.859
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.838
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.828