Pavir.Ib01336 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.Ib01336 T247214_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib01336.1.p LOB 60 158

Links

Other LOB family TFs
Other Panicum virgatum TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OS05G0123000 Oryza sativa OS05G0123000 I 0.754
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.869
Ca_04287 Cicer arietinum Ca_04287 I 0.808
Ca_14605 Cicer arietinum Ca_14605 I 0.838
Cla000556 Citrullus lanatus Cla000556 I 0.828
Cla020379 Citrullus lanatus Cla020379 I 0.808
Pm000938 Prunus mume Pm000938 I 0.879
Pm018585 Prunus mume Pm018585 I 0.828
30111.m000703 Ricinus communis 30111.m000703 I 0.869
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.838
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.859
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.818
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.859
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.717
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.828
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.838
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.859
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.798
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.859
PGSC0003DMG400027372 Solanum tuberosum PGSC0003DMG400027372 I 0.744
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.808
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.808
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.859
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.828
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.859
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.768
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.848
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.818
TCM_041094 Theobroma cacao TCM_041094 I 0.869
TCM_043081 Theobroma cacao TCM_043081 I 0.808
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.828
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.869
MDP0000319331 Malus domestica MDP0000319331 I 0.848
MDP0000822986 Malus domestica MDP0000822986 I 0.798
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.828
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.717
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.859
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.848
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.848
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.808
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.818
PK17019.1 Cannabis sativa PK17019.1 I 0.735
PK23777.1 Cannabis sativa PK23777.1 I 0.828
PK27389.1 Cannabis sativa PK27389.1 I 0.859
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.818
MDP0000318244 Malus domestica MDP0000318244 I 0.859
MDP0000218986 Malus domestica MDP0000218986 I 0.859
MDP0000151784 Malus domestica MDP0000151784 I 0.828
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.808
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 0.795
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.702
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.838
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.838
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.859
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.838
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.828
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.838
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.788
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.788
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.808
MDP0000123013 Malus domestica MDP0000123013 I 0.828
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.796
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.869
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.848
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.808
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.818
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.707
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.838
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.818
OB05G11740 Oryza brachyantha OB05G11740 I 0.859
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.838
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.818
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.859
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.848
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.818
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.808
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.737
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.754
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.754
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.818
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.818
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.768
Bra035698 Brassica rapa Bra035698 N 0.768
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.808
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.778
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.778
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.808
mgf015666m Mimulus guttatus mgf015666m N 0.818
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.798
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.869
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.980
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.761
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.990
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.758
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.768
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.762
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.828
Bo4g165420 Brassica oleracea Bo4g165420 N 0.768
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.778
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.990
Bo3g040220 Brassica oleracea Bo3g040220 N 0.758
Bo01039s010 Brassica oleracea Bo01039s010 N 0.778
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.960
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.788
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.960
LBD11 Arabidopsis thaliana AT2G28500 N 0.788
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.838
Bo5g008590 Brassica oleracea Bo5g008590 N 0.798
Bo8g112780 Brassica oleracea Bo8g112780 N 0.768
Bra000491 Brassica rapa Bra000491 N 0.778
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.830
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.788
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.778
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.788
F775_02335 Aegilops tauschii F775_02335 N 0.949
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.919
Bra031599 Brassica rapa Bra031599 N 0.758
Bra018675 Brassica rapa Bra018675 N 0.798
Bra011942 Brassica rapa Bra011942 N 0.778
MDP0000879799 Malus domestica MDP0000879799 N 0.798
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.798
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.798
OS03G0287400 Oryza sativa OS03G0287400 N 0.960
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.761
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.717
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.960
OLONG_017777 Oryza longistaminata OLONG_017777 N 0.974
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.828
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.828
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.828
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.929
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.960
TRIUR3_27720 Triticum urartu TRIUR3_27720 N 0.839
OMERI05G01740 Oryza meridionalis OMERI05G01740 N 0.863
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.960
Si037280m.g Setaria italica Si037280m.g N 0.960
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.727
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.707
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.960
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.859
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.960
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.863
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.729
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.960
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.990
Si024430m.g Setaria italica Si024430m.g N 0.848
OBART05G01640 Oryza barthii OBART05G01640 N 0.865
OBART03G13260 Oryza barthii OBART03G13260 N 0.960
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.727
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.766
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.859
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.818
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.788
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.727
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.778
Cucsa.358620 Cucumis sativus Cucsa.358620 N 0.705
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.737
mgf019622m Mimulus guttatus mgf019622m N 0.727
mgf022524m Mimulus guttatus mgf022524m N 0.798
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.939
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.919
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.879
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.737
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.768
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.717
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.736
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.707
Ca_02507 Cicer arietinum Ca_02507 N 0.808
OB03G23270 Oryza brachyantha OB03G23270 N 0.970
Cla005133 Citrullus lanatus Cla005133 N 0.768
Cla005134 Citrullus lanatus Cla005134 N 0.808
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.828
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.798