Pavir.J03238 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.J03238 T247221_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03238.1.p LOB 32 130
Pavir.J03238.2.p LOB 32 130

Links

Other LOB family TFs
Other Panicum virgatum TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD6 Arabidopsis thaliana AT1G65620 D 0.828
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.828
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.737
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.707
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.747
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.737
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.828
30147.m013890 Ricinus communis 30147.m013890 I 0.707
29929.m004500 Ricinus communis 29929.m004500 I 0.828
29676.m001633 Ricinus communis 29676.m001633 I 0.727
Pm026450 Prunus mume Pm026450 I 0.768
Pm024312 Prunus mume Pm024312 I 0.707
Pm010483 Prunus mume Pm010483 I 0.727
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.758
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.707
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.828
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.747
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.798
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.778
mgf014755m Mimulus guttatus mgf014755m I 0.818
mgf004296m Mimulus guttatus mgf004296m I 0.758
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.707
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.737
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.707
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.808
Cla020438 Citrullus lanatus Cla020438 I 0.717
Cla019510 Citrullus lanatus Cla019510 I 0.707
Cla005851 Citrullus lanatus Cla005851 I 0.808
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.889
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.919
Traes_1DL_B8551270A Triticum aestivum Traes_1DL_B8551270A I 0.778
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.954
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.909
TCM_024217 Theobroma cacao TCM_024217 I 0.828
TCM_012190 Theobroma cacao TCM_012190 I 0.707
TCM_000560 Theobroma cacao TCM_000560 I 0.768
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.818
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.707
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.808
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.909
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.852
Ca_20200 Cicer arietinum Ca_20200 I 0.798
Ca_11161 Cicer arietinum Ca_11161 I 0.707
Ca_08824 Cicer arietinum Ca_08824 I 0.707
Ca_07463 Cicer arietinum Ca_07463 I 0.717
Ca_02125 Cicer arietinum Ca_02125 I 0.727
Ca_02124 Cicer arietinum Ca_02124 I 0.737
LOB Vitis vinifera VIT_17s0000g09010 I 0.707
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.717
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.737
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.737
AS2 Vitis vinifera VIT_00s0340g00090 I 0.828
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.737
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.737
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.717
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.990
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.727
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.707
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.929
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.758
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.808
MDP0000777060 Malus domestica MDP0000777060 I 0.737
MDP0000643326 Malus domestica MDP0000643326 I 0.818
MDP0000562305 Malus domestica MDP0000562305 I 0.758
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.909
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.919
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.707
PK18922.1 Cannabis sativa PK18922.1 I 0.842
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.828
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.727
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.758
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.758
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.747
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.828
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.828
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.707
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.707
MDP0000310871 Malus domestica MDP0000310871 I 0.747
MDP0000273432 Malus domestica MDP0000273432 I 0.828
MDP0000254288 Malus domestica MDP0000254288 I 0.707
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.828
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.747
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.828
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.702
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.707
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.707
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.828
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.758
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.808
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.747
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.828
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.768
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.717
MDP0000197526 Malus domestica MDP0000197526 I 0.717
MDP0000133546 Malus domestica MDP0000133546 I 0.717
MDP0000130659 Malus domestica MDP0000130659 I 0.707
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.727
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.727
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.808
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.727
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.758
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.727
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.838
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.758
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.747
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.747
OB01G14220 Oryza brachyantha OB01G14220 I 0.707
GSMUA_Achr2G13400_001 Musa acuminata GSMUA_Achr2G13400_001 I 0.710
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.833
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.707
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.879
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.929
GRMZM2G096064 Zea mays GRMZM2G096064 I 0.818
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.707
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.798
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.798
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.758
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.737
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.833
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.737
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.798
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.727
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.707
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.717
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.919
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.919
LPERR05G13240 Leersia perrieri LPERR05G13240 I 0.814
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.707
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.899
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.707
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.850
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.707
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.737
Bra012112 Brassica rapa Bra012112 I 0.747
Bo7g064360 Brassica oleracea Bo7g064360 I 0.747
Bo2g167820 Brassica oleracea Bo2g167820 I 0.717
Bo2g051420 Brassica oleracea Bo2g051420 I 0.828
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.909
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.707
LBD6 Oryza indica BGIOSGA004955 I 0.899
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.754
LBD36 Arabidopsis thaliana AT5G66870 I 0.747
LBD10 Arabidopsis thaliana AT2G23660 I 0.707
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.778
Bra039733 Brassica rapa Bra039733 I 0.828
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.879
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.707
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.707
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.737
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.737
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.747
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.828
F775_33210 Aegilops tauschii F775_33210 I 0.753
F775_25656 Aegilops tauschii F775_25656 I 0.707
F775_21760 Aegilops tauschii F775_21760 I 0.909
F775_20715 Aegilops tauschii F775_20715 I 0.919
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.899
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.707
OB01G48740 Oryza brachyantha OB01G48740 I 0.909
Si036905m.g Setaria italica Si036905m.g I 0.727
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.727
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.707
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.707
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.828
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.828
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.758
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.737
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.747
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.727
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.737
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.808
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.707
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.768
Si024114m.g Setaria italica Si024114m.g I 0.970
Si002632m.g Setaria italica Si002632m.g I 0.707
Si002599m.g Setaria italica Si002599m.g I 0.929
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.717
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.717
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.707
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.970
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.929
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.707
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.727
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.828
OS05G0417000 Oryza sativa OS05G0417000 I 0.909
OS03G0612400 Oryza sativa OS03G0612400 I 0.707
LBD6 Oryza sativa OS01G0889400 I 0.899
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.899
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.707
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.899
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.707
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.899
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.909
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.707
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.899
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.707
OBART01G39990 Oryza barthii OBART01G39990 I 0.899
OBART01G04470 Oryza barthii OBART01G04470 I 0.707
OB05G24560 Oryza brachyantha OB05G24560 I 0.909
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.707
OS01G0169400 Oryza sativa OS01G0169400 I 0.707
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.909
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.707
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.899
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.707
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.909
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.707
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.899
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.707
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.899
GRMZM2G121487 Zea mays GRMZM2G121487 N 0.724
ONIVA05G17300 Oryza nivara ONIVA05G17300 N 0.709