PK13228.1 (Cannabis sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PK13228.1 T247384_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.828 0.828
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.734 0.734
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK13228.1 LOB 8 71

Links

Other LOB family TFs
Other Cannabis sativa TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g06665 Acanthocheilonema viteae nAv.1.0.1.g06665 I 0.000
ANCCEY_07283 Ancylostoma ceylanicum ANCCEY_07283 I 0.000
ASIM_0001356901 Anisakis simplex ASIM_0001356901 N 0.000
ASIM_0000382801 Anisakis simplex ASIM_0000382801 N 0.000
ALUE_0002350801 Ascaris lumbricoides ALUE_0002350801 I 0.000
ASU_10957 Ascaris suum ASU_10957 N 0.000
ACEP15405 Atta cephalotes ACEP15405 I 0.000
Bm4832 Brugia malayi Bm4832 N 0.000
BTMF_0001499101 Brugia timori BTMF_0001499101 N 0.000
tfap2c Danio rerio ENSDARG00000040606 I 0.000
tfap2b Danio rerio ENSDARG00000012667 I 0.000
EmuJ_000457200 Echinococcus multilocularis EmuJ_000457200 I 0.000
ENSETEG00000009017 Echinops telfairi ENSETEG00000009017 I 0.000
ECPE_0000534101 Echinostoma caproni ECPE_0000534101 I 0.000
EEL_0000091101 Elaeophora elaphi EEL_0000091101 N 0.000
EVEC_0000221401 Enterobius vermicularis EVEC_0000221401 I 0.000
D915_00208 Fasciola hepatica D915_00208 I 0.000
ENSFCAG00000013878 Felis catus ENSFCAG00000013878 I 0.000
ENSGMOG00000009513 Gadus morhua ENSGMOG00000009513 I 0.000
ENSGACG00000002672 Gasterosteus aculeatus ENSGACG00000002672 I 0.000
GPLIN_001548200 Globodera pallida GPLIN_001548200 I 0.000
GPUH_0002219901 Gongylonema pulchrum GPUH_0002219901 I 0.000
Hsal_09862--XP_394369.3_APIME Harpegnathos saltator Hsal_09862--XP_394369.3_APIME I 0.000
Hba_07416 Heterorhabditis bacteriophora Hba_07416 I 0.000
TFAP2A Homo sapiens ENSG00000137203 D 0.000
nLs.2.1.2.g04852 Litomosoides sigmodontis nLs.2.1.2.g04852 N 0.000
ENSMEUG00000007703 Macropus eugenii ENSMEUG00000007703 I 0.000
MCINX002204 Melitaea cinxia MCINX002204 I 0.000
genemark-nMf.1.1.scaf12791-processed-gene-0.1 Meloidogyne floridensis genemark-nMf.1.1.scaf12791-processed-gene-0.1 I 0.000
snap_masked-nMf.1.1.scaf31395-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf31395-processed-gene-0.2 I 0.000
MhA1_Contig1235.frz3.gene9 Meloidogyne hapla MhA1_Contig1235.frz3.gene9 I 0.000
TFAP2D Microcebus murinus ENSMICG00000005507 I 0.000
Myotis_brandtii_TFAP2C_10018204 Myotis brandtii Myotis_brandtii_TFAP2C_10018204 I 0.000
OFLC_0000811001 Onchocerca flexuosa OFLC_0000811001 I 0.000
nOo.2.0.1.g09186 Onchocerca ochengi nOo.2.0.1.g09186 I 0.000
WBGene00238500 Onchocerca volvulus WBGene00238500 N 0.000
PEQ_0000626601 Parascaris equorum PEQ_0000626601 I 0.000
scaffold16-EXSNAP2012.142 Pristionchus exspectatus scaffold16-EXSNAP2012.142 I 0.000
PPA19579 Pristionchus pacificus PPA19579 I 0.000
ENSPCAG00000015999 Procavia capensis ENSPCAG00000015999 I 0.000
RSKR_0000054900 Rhabditophanes kr3021 RSKR_0000054900 N 0.000
Sakowv30010957m.g Saccoglossus kowalevskii Sakowv30010957m.g I 0.000
SSLN_0000471801 Schistocephalus solidus SSLN_0000471801 I 0.000
SMTD_0001395301 Schistosoma mattheei SMTD_0001395301 I 0.000
ENSSARG00000001996 Sorex araneus ENSSARG00000001996 I 0.000
SPER_0000909201 Spirometra erinaceieuropaei SPER_0000909201 I 0.000
L596_g21158 Steinernema carpocapsae L596_g21158 N 0.000
L889_g15327 Steinernema feltiae L889_g15327 N 0.000
L893_g11990 Steinernema glaseri L893_g11990 N 0.000
L898_g10045 Steinernema monticolum L898_g10045 N 0.000
L892_g25112 Steinernema scapterisci L892_g25112 N 0.000
SSTP_0000790300 Strongyloides stercoralis SSTP_0000790300 N 0.000
TsM_000500400 Taenia solium TsM_000500400 I 0.000
TELCIR_24906 Teladorsagia circumcincta TELCIR_24906 I 0.000
D917_08051 Trichinella nativa D917_08051 I 0.000
D918_05204 Trichuris suis D918_05204 I 0.000
TTRE_0000281201 Trichuris trichiura TTRE_0000281201 I 0.000
WUBG_08739 Wuchereria bancrofti WUBG_08739 N 0.000
ENSXMAG00000003446 Xiphophorus maculatus ENSXMAG00000003446 I 0.000