GSMUA_Achr1G11500_001 (Musa acuminata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 GSMUA_Achr1G11500_001 T249157_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G58630
M06976_2.00
Arabidopsis thaliana
HNTCGCCGGARWHDN

NHDWYTCCGGCGAND
Dap-seq
OMalley et al.(2016)
AT3G58630_col_a
0.889 0.690
AT3G58630
M06977_2.00
Arabidopsis thaliana
NNTCGCCGGARWHDN

NHDWYTCCGGCGANN
Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a
0.889 0.690
ASIL2
M06973_2.00
Arabidopsis thaliana
TCRCCGGARAH

DTYTCCGGYGA
Dap-seq
OMalley et al.(2016)
At3g14180_col
0.840 0.634
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr1P11500_001 MADF 34 112

Links

Other MADF family TFs
Other Musa acuminata TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ASIL2 Arabidopsis thaliana AT3G14180 D 0.840
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.889
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.847
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.888
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.896
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.878
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.878
mgf000047m Mimulus guttatus mgf000047m I 0.882
mgf006505m Mimulus guttatus mgf006505m I 0.913
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.895
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.888
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.840
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.882
29900.m001628 Ricinus communis 29900.m001628 I 0.896
29814.m000741 Ricinus communis 29814.m000741 I 0.854
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.852
TCM_029695 Theobroma cacao TCM_029695 I 0.864
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.853
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.880
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.873
Ca_00394 Cicer arietinum Ca_00394 I 0.863
Ca_19877 Cicer arietinum Ca_19877 I 0.893
Cla002288 Citrullus lanatus Cla002288 I 0.898
Cla009854 Citrullus lanatus Cla009854 I 0.838
Cla019967 Citrullus lanatus Cla019967 I 0.878
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.840
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.835
MDP0000301451 Malus domestica MDP0000301451 I 0.907
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.862
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.846
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.907
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.907
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.825
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.851
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.853
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.889
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.840
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.896
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.882
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.840
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.882
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.862
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.846
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.832
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.857
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.875
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.902
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.861
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.882
PK27986.1 Cannabis sativa PK27986.1 I 0.891
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.851
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.824
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.907
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.965
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.964
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.889
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.844
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.930
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.884
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.889
OBART05G25610 Oryza barthii OBART05G25610 I 0.907
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.863
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.822
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.863
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.907
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.907
Bo6g075950 Brassica oleracea Bo6g075950 I 0.890
Bra007407 Brassica rapa Bra007407 I 0.857
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.897
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.840
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.887
Bra003346 Brassica rapa Bra003346 I 0.891
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.834
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.907
OS05G0560600 Oryza sativa OS05G0560600 I 0.907
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.851
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.852
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.861
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.835
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.873
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.907
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.907
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.907
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.847
Si022565m.g Setaria italica Si022565m.g I 0.907
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.832
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.907
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.895
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.907
BGIOSGA001035 Oryza indica BGIOSGA001035 N 0.828
BRADI2G46320 Brachypodium distachyon BRADI2G46320 N 0.859
TRAES3BF009800030CFD_g Triticum aestivum TRAES3BF009800030CFD_g N 0.840
TCM_042467 Theobroma cacao TCM_042467 N 0.859
MDP0000097759 Malus domestica MDP0000097759 N 0.821
OMERI01G23900 Oryza meridionalis OMERI01G23900 N 0.828
OGLUM01G30050 Oryza glumaepatula OGLUM01G30050 N 0.828
ONIVA01G29560 Oryza nivara ONIVA01G29560 N 0.828
LPERR01G22430 Leersia perrieri LPERR01G22430 N 0.846
OPUNC01G26130 Oryza punctata OPUNC01G26130 N 0.846
Cucsa.195790 Cucumis sativus Cucsa.195790 N 0.874
ORGLA01G0214300 Oryza glaberrima ORGLA01G0214300 N 0.828
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.861
GRMZM2G023119 Zea mays GRMZM2G023119 N 0.885
OS01G0674000 Oryza sativa OS01G0674000 N 0.828
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.837
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.852