Gorai.009G144800 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.009G144800 T250715_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ASIL2
M06973_2.00
Arabidopsis thaliana
TCRCCGGARAH

DTYTCCGGYGA
Dap-seq
OMalley et al.(2016)
At3g14180_col
0.893 0.845
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G144800.1 MADF 93 170

Links

Other MADF family TFs
Other Gossypium raimondii TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.926
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.844
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.818
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.848
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.934
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.893
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.844
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.901
ASIL2 Arabidopsis thaliana AT3G14180 D 0.893
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.900
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.844
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.893
Bo1g134590 Brassica oleracea Bo1g134590 I 0.863
Bra037960 Brassica rapa Bra037960 I 0.816
Bra014370 Brassica rapa Bra014370 I 0.824
PK22475.1 Cannabis sativa PK22475.1 N 0.904
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.856
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.893
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.829
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.829
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.893
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.842
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.860
Cla015773 Citrullus lanatus Cla015773 I 0.958
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.849
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.967
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.849
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.967
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.958
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.893
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.831
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.885
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.945
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.952
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.890
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.964
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.865
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.924
MDP0000943251 Malus domestica MDP0000943251 N 0.842
MDP0000097759 Malus domestica MDP0000097759 N 0.858
MDP0000255104 Malus domestica MDP0000255104 I 0.942
MDP0000281471 Malus domestica MDP0000281471 I 0.942
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.916
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.968
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.923
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.917
mgf000047m Mimulus guttatus mgf000047m I 0.841
mgf006505m Mimulus guttatus mgf006505m I 0.883
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.844
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.859
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.836
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.868
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.836
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.945
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.877
Pm013209 Prunus mume Pm013209 I 0.943
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.818
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.943
29814.m000741 Ricinus communis 29814.m000741 I 0.855
29727.m000472 Ricinus communis 29727.m000472 I 0.923
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.877
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.877
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.934
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.854
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.873
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.962
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.945
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.873
TCM_042467 Theobroma cacao TCM_042467 N 0.893
TCM_029209 Theobroma cacao TCM_029209 I 0.921
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.901
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.910