CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMTR_s00066p00109320
(
Amborella trichopoda
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AMTR_s00066p00109320
T252813_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS16
M10971_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.792
0.792
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.750
0.750
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.750
0.750
Q8VWZ4_MALDO
M11026_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.750
0.750
AP3
M10919_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.750
0.750
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.729
0.729
squamosa
M02697_2.00
Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK
SELEX
Mathelier et al.(2014)
MA0082.1
0.708
0.708
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.708
0.708
SOC1
M10915_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.708
0.708
Q9LEI3_HORVU
M10985_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM3_01
0.708
0.708
FBP24_PETHY
M10997_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.708
0.708
M17_MAIZE
M10959_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.708
0.708
Q8GT99_TOBAC
M11006_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_02
0.708
0.708
MAD14_ORYSJ
M10960_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_01
0.708
0.708
Q8VWZ3_MALDO
M11025_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.708
0.708
MADS2_PETHY
M10998_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.708
0.708
Q9ZRA5_MALDO
M11030_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_04
0.708
0.708
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.708
0.708
O82695_MALDO
M11019_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_01
0.708
0.708
Q9SBQ1_PETHY
M11017_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PFG_01
0.708
0.708
Q9AVU7_MALDO
M11027_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.708
0.708
Q38742_ANTMA
M11000_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SQUA_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ERN20181
MADS box
10
57
RIENPTNRQVTYSKRRAGITKKARELAVLCDAQVSLIMFSTTGKLSEY
Links
Other
MADS box
family TFs
Other
Amborella trichopoda
TFs
377 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy