CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MAF4
(
Arabidopsis thaliana
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AT5G65070
T252939_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.792
0.792
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.792
0.792
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.792
0.792
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.771
0.771
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G65070.1
MADS box
10
57
RIENKSSRQVTFCKRRNGLMEKARQLSILCESSVALIIISATGRLYSF
AT5G65070.2
MADS box
10
57
RIENKSSRQVTFCKRRNGLMEKARQLSILCESSVALIIISATGRLYSF
AT5G65070.3
MADS box
10
57
RIENKSSRQVTFCKRRNGLMEKARQLSILCESSVALIIISATGRLYSF
AT5G65070.4
MADS box
10
57
RIENKSSRQVTFCKRRNGLMEKARQLSILCESSVALIIISATGRLYSF
AT5G65070.5
MADS box
10
57
RIENKSSRQVTFCKRRNGLMEKARQLSILCESSVALIIISATGRLYSF
Links
Other
MADS box
family TFs
Other
Arabidopsis thaliana
TFs
50 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy