Bo8g104060 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo8g104060 T253190_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g104060.1 MADS box 10 57

Links

Other MADS box family TFs
Other Brassica oleracea TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL65 Arabidopsis thaliana AT1G18750 D 0.875
Pm024895 Prunus mume Pm024895 I 0.812
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.875
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.729
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.708
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.854
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.854
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.729
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.739
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.854
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.729
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.833
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.833
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.717
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.729
29813.m001508 Ricinus communis 29813.m001508 I 0.783
30138.m004061 Ricinus communis 30138.m004061 I 0.896
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.729
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.729
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.875
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.854
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.771
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.804
mgf000945m Mimulus guttatus mgf000945m I 0.750
mgf004425m Mimulus guttatus mgf004425m I 0.750
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.812
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.854
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.854
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.851
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.792
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.729
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.761
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.938
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.854
PK03147.1 Cannabis sativa PK03147.1 I 0.729
PK21701.1 Cannabis sativa PK21701.1 I 0.833
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.854
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.761
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.792
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.729
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.854
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.729
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.729
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.833
MDP0000146231 Malus domestica MDP0000146231 I 0.750
MDP0000146415 Malus domestica MDP0000146415 I 0.800
MDP0000147667 Malus domestica MDP0000147667 I 0.771
MDP0000193129 Malus domestica MDP0000193129 I 0.833
MDP0000773068 Malus domestica MDP0000773068 I 0.800
MDP0000919323 Malus domestica MDP0000919323 I 0.800
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.854
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.804
Pm006479 Prunus mume Pm006479 I 0.804
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.761
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.875
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.870
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.771
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.787
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.792
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.750
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.875
Bo8g068060 Brassica oleracea Bo8g068060 I 1.000
F775_13266 Aegilops tauschii F775_13266 I 0.804
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.729
Bra031049 Brassica rapa Bra031049 I 1.000
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.826
AGL30 Arabidopsis thaliana AT2G03060 I 0.761
Bo6g109050 Brassica oleracea Bo6g109050 I 0.739
Bo7g080890 Brassica oleracea Bo7g080890 I 0.739
Bra004393 Brassica rapa Bra004393 I 0.739
Bra016544 Brassica rapa Bra016544 I 1.000
Bra024792 Brassica rapa Bra024792 I 0.739
Bra025685 Brassica rapa Bra025685 I 0.917
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.729
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.750
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.804
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.804
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.812
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.804
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.804
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.848
TCM_014051 Theobroma cacao TCM_014051 I 0.875
TCM_011687 Theobroma cacao TCM_011687 I 0.761
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.729
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.804
Cla018884 Citrullus lanatus Cla018884 I 0.771
Cla010361 Citrullus lanatus Cla010361 I 0.792
Ca_18082 Cicer arietinum Ca_18082 I 0.729
Ca_16376 Cicer arietinum Ca_16376 I 0.739
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.833
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.717
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.739
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.708
Bo9g072860 Brassica oleracea Bo9g072860 N 0.717
Ciclev10010259m.g Citrus clementina Ciclev10010259m.g N 0.717
Si028357m.g Setaria italica Si028357m.g N 0.761
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.708
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.708
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.761
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.739
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.761
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.761
OBART11G21780 Oryza barthii OBART11G21780 N 0.708
OS11G0658700 Oryza sativa OS11G0658700 N 0.708
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.702
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.739
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.729
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.750
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.761
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.717
Gorai.010G096200 Gossypium raimondii Gorai.010G096200 N 0.708