Bra022771 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra022771 T253314_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW

WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.875 0.875
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS

STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.875 0.875
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH

DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.875 0.875
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB

VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022771.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL27 Arabidopsis thaliana AT1G77080 D 0.766
FLC Arabidopsis thaliana AT5G10140 D 0.875
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.750
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.854
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.771
FLC Arabidopsis lyrata scaffold_601028.1 I 0.875
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.750
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.708
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.750
Bra031888 Brassica rapa Bra031888 I 0.771
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.875
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.729
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.750
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.771
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.750
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.875
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.729
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.771
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.729
Bra031886 Brassica rapa Bra031886 I 0.771
Bra031884 Brassica rapa Bra031884 I 0.750
Bra028599 Brassica rapa Bra028599 I 0.854
AGL31 Arabidopsis thaliana AT5G65050 I 0.750
MAF4 Arabidopsis thaliana AT5G65070 I 0.750
MAF5 Arabidopsis thaliana AT5G65080 I 0.708
Bo01054s010 Brassica oleracea Bo01054s010 I 0.771
Bo13628s010 Brassica oleracea Bo13628s010 I 0.854
Bo2g166500 Brassica oleracea Bo2g166500 I 0.750
Bo3g005470 Brassica oleracea Bo3g005470 I 0.792
Bo3g024250 Brassica oleracea Bo3g024250 I 0.958
Bo3g100540 Brassica oleracea Bo3g100540 I 0.750
Bo3g100570 Brassica oleracea Bo3g100570 I 0.812
Bo9g173370 Brassica oleracea Bo9g173370 I 0.854
Bo9g173400 Brassica oleracea Bo9g173400 I 0.854
Bra006051 Brassica rapa Bra006051 I 0.833
Bra009055 Brassica rapa Bra009055 I 0.875
Bra024350 Brassica rapa Bra024350 I 0.812
Bra024351 Brassica rapa Bra024351 I 0.750
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.875