fgenesh1_pm.C_scaffold_7000337 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh1_pm.C_scaffold_7000337 T254011_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_7000337 MADS box 15 62

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL62 Arabidopsis thaliana AT5G60440 I 0.854
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.737
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.729
MDP0000434703 Malus domestica MDP0000434703 I 0.854
Pm030655 Prunus mume Pm030655 I 0.729
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.792
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.854
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.708
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.833
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.833
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.854
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.792
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.854
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.750
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.717
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.812
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.792
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.812
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.854
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.750
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.833
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.771
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.833
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.792
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.792
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.833
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.854
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.812
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.833
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.896
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.771
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.854
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.771
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
mgf018529m Mimulus guttatus mgf018529m N 0.750
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.979
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.833
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.896
mgf024307m Mimulus guttatus mgf024307m N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.854
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.771
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.771
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.854
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.833
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.792
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.833
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.750
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.833
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.792
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.708
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.896
mgf022147m Mimulus guttatus mgf022147m N 0.729
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.708
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.812
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.771
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.833
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
MDP0000278770 Malus domestica MDP0000278770 N 0.833
MDP0000233925 Malus domestica MDP0000233925 N 0.833
MDP0000221590 Malus domestica MDP0000221590 N 0.792
MDP0000168914 Malus domestica MDP0000168914 N 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.812
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.833
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.792
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.708
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.729
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.896
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.875
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.771
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.812
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.708
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.833
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.854
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.812
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.750
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.792
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.833
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.833
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.854
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.833
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.854
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.833
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.708
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.854
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.833
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.854
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.771
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.833
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.833
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.833
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.812
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.833
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.875
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.708
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.833
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.708
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.812
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.812
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.812
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.833
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.771
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.792
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.771
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.833
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.771
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.812
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.812
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.812
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.812
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.771
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.812
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.812
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.771
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.771
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.812
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.812
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.708
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.708
Bo5g113750 Brassica oleracea Bo5g113750 N 0.875
Bo4g165540 Brassica oleracea Bo4g165540 N 0.750
Bo4g070340 Brassica oleracea Bo4g070340 N 0.723
Bo2g024910 Brassica oleracea Bo2g024910 N 0.750
Bo1g112460 Brassica oleracea Bo1g112460 N 0.875
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.917
AGL61 Arabidopsis thaliana AT2G24840 N 0.771
AGL23 Arabidopsis thaliana AT1G65360 N 0.812
AGL28 Arabidopsis thaliana AT1G01530 N 0.792
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.771
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.812
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
Bo9g142570 Brassica oleracea Bo9g142570 N 0.812
Bra002480 Brassica rapa Bra002480 N 0.812
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.708
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.875
Bra038225 Brassica rapa Bra038225 N 0.854
Bra035685 Brassica rapa Bra035685 N 0.708
Bra032057 Brassica rapa Bra032057 N 0.708
Bra022434 Brassica rapa Bra022434 N 0.854
Bra020247 Brassica rapa Bra020247 N 0.729
Bra011938 Brassica rapa Bra011938 N 0.729
Bra007829 Brassica rapa Bra007829 N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.833
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.812
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
Ca_04662 Cicer arietinum Ca_04662 N 0.771
Ca_04661 Cicer arietinum Ca_04661 N 0.812
Ca_04660 Cicer arietinum Ca_04660 N 0.854
Ca_04659 Cicer arietinum Ca_04659 N 0.854
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.792
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.729
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.792
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.812
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.792
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.792
Ca_04665 Cicer arietinum Ca_04665 N 0.833
Ca_07607 Cicer arietinum Ca_07607 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.833
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
30099.m001672 Ricinus communis 30099.m001672 N 0.854
29838.m001672 Ricinus communis 29838.m001672 N 0.708
29613.m000367 Ricinus communis 29613.m000367 N 0.750
Pm021071 Prunus mume Pm021071 N 0.854
Pm021070 Prunus mume Pm021070 N 0.750
Pm021018 Prunus mume Pm021018 N 0.812
Pm021017 Prunus mume Pm021017 N 0.750
Cla006571 Citrullus lanatus Cla006571 N 0.875
TCM_040735 Theobroma cacao TCM_040735 N 0.729
TCM_006325 Theobroma cacao TCM_006325 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.729
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.708
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.708
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.792
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.812
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.812
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.812
TCM_006323 Theobroma cacao TCM_006323 N 0.875
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.729
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.854
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.792
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.854
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.812
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.750
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.750
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.812
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.750