CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
AGL24
(
Arabidopsis lyrata
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
fgenesh2_kg.7__1822__AT4G24540.1
T254040_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.917
0.917
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.917
0.917
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.917
0.917
A1YJE4_HORVD
M10900_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM10_01
0.771
0.771
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.729
0.729
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.729
0.729
SOC1
M10915_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.729
0.729
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.729
0.729
MAD17_ORYSJ
M10961_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.729
0.729
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.729
0.729
MAD55_ORYSJ
M10962_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS55_01
0.729
0.729
MADS6
M10967_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.729
0.729
Q4U0F1_WHEAT
M10978_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAVRT2_01
0.729
0.729
AGL42
M06995_2.00
Arabidopsis thaliana
RATGATG
CATCATY
Dap-seq
OMalley et al.(2016)
AGL42_col_a
0.708
0.708
squamosa
M02697_2.00
Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK
SELEX
Mathelier et al.(2014)
MA0082.1
0.708
0.708
SEP1
M02696_2.00
Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN
SELEX
Mathelier et al.(2014)
MA0584.1
0.708
0.708
SEP3
M08143_2.00
Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG
ChIP-seq
Mathelier et al.(2014)
MA0563.1
0.708
0.708
SEP1
M10929_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_01
0.708
0.708
SEP1
M10930_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_02
0.708
0.708
SEP3
M10902_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL9_01
0.708
0.708
AGL9_PETHY
M10993_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP2_01
0.708
0.708
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.708
0.708
Q9ATE6_PETHY
M11009_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP23_01
0.708
0.708
Q9ATE2_PETHY
M11007_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP29_01
0.708
0.708
Q9ATF3_PETHY
M11015_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP4_01
0.708
0.708
Q9ATF2_PETHY
M11014_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP5_01
0.708
0.708
Q9ATF1_PETHY
M11013_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP9_01
0.708
0.708
O82084_MALDO
M11018_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_01
0.708
0.708
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.708
0.708
O82699_MALDO
M11022_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.708
0.708
Q6UGQ8_PETHY
M11005_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_01
0.708
0.708
MADS18
M10973_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS18_01
0.708
0.708
Q9FVN1_MAIZE
M10982_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_03
0.708
0.708
Q9ZRA5_MALDO
M11030_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_04
0.708
0.708
Q9ST54_MALDO
M11029_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_04
0.708
0.708
Q9LM09_TOBAC
M11016_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS4_01
0.708
0.708
MADS5
M10970_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_02
0.708
0.708
O82697_MALDO
M11020_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_01
0.708
0.708
MADS7
M10975_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_02
0.708
0.708
MADS8
M10976_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_01
0.708
0.708
Q9SBA6_MALDO
M11028_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_02
0.708
0.708
Q38742_ANTMA
M11000_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SQUA_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.7__1822__AT4G24540.1
MADS box
10
57
KIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEF
Links
Other
MADS box
family TFs
Other
Arabidopsis lyrata
TFs
877 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy