H105_07554 (Trichophyton soudanense)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 H105_07554 T254440_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
srfA
M02283_2.00
Dictyostelium discoideum
MYDWWWNNRD

HYNNWWWHRK
PBM
Weirauch et al.(2014)
pTH5539
0.917 0.917
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN

NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.875 0.875
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN

NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.875 0.875
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW

WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.875 0.875
MCM1
M10991_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.875 0.875
MCM1
M10992_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.875 0.875
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG

CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.875 0.875
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.812 0.812
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.812 0.812
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.812 0.812
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.812 0.812
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.812 0.812
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.812 0.812
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.812 0.812
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.812 0.812
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.812 0.812
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.812 0.812
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.812 0.812
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.812 0.812
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.812 0.812
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.812 0.812
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.812 0.812
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.812 0.812
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.812 0.812
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.812 0.812
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.812 0.812
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.812 0.812
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.812 0.812
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.812 0.812
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.771 0.771
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.771 0.771
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EZF70026 MADS box 61 108

Links

Other MADS box family TFs
Other Trichophyton soudanense TFs

451 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_28453 Aegilops tauschii F775_28453 N 0.000
BRADI5G10640 Brachypodium distachyon BRADI5G10640 N 0.000
MLOC_15681 Hordeum vulgare MLOC_15681 N 0.000
LPERR04G10110 Leersia perrieri LPERR04G10110 N 0.000
LPERR02G16450 Leersia perrieri LPERR02G16450 N 0.000
OBART02G20450 Oryza barthii OBART02G20450 N 0.000
OB02G27960 Oryza brachyantha OB02G27960 N 0.000
OB04G20560 Oryza brachyantha OB04G20560 N 0.000
ORGLA02G0175400 Oryza glaberrima ORGLA02G0175400 N 0.000
OGLUM02G20740 Oryza glumaepatula OGLUM02G20740 N 0.000
BGIOSGA008422 Oryza indica BGIOSGA008422 N 0.000
OLONG_024951 Oryza longistaminata OLONG_024951 N 0.000
OMERI02G20160 Oryza meridionalis OMERI02G20160 N 0.000
OPUNC02G18340 Oryza punctata OPUNC02G18340 N 0.000
ORUFI02G21510 Oryza rufipogon ORUFI02G21510 N 0.000
OS02G0555300 Oryza sativa OS02G0555300 N 0.000
Pavir.Ab01921 Panicum virgatum Pavir.Ab01921 N 0.000
Pavir.Aa01694 Panicum virgatum Pavir.Aa01694 N 0.000
Pavir.J27766 Panicum virgatum Pavir.J27766 N 0.000
Si018368m.g Setaria italica Si018368m.g N 0.000
Sb04g022672 Sorghum bicolor Sb04g022672 N 0.000
Traes_2BL_F4302657F Triticum aestivum Traes_2BL_F4302657F N 0.000
Traes_2DL_61C443C56 Triticum aestivum Traes_2DL_61C443C56 N 0.000
Traes_2AL_8A23618BA Triticum aestivum Traes_2AL_8A23618BA N 0.000
GRMZM2G094067 Zea mays GRMZM2G094067 N 0.000