Cla000705 (Citrullus lanatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cla000705 T256941_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8VWZ2_MALDO
M11024_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_02
0.729 0.729
AGL1
M02694_2.00
Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN

NDTWCCHNWWWWGGHAHN
SELEX
Mathelier et al.(2014)
MA0585.1
0.708 0.708
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN

NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.708 0.708
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN

NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.708 0.708
AG
M10924_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.708 0.708
AG
M10925_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.708 0.708
AG_TOBAC
M10995_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.708 0.708
AGL1
M10920_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_01
0.708 0.708
AGL1
M10921_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_02
0.708 0.708
SEP2
M10916_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL4_01
0.708 0.708
AG
M10926_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.708 0.708
Q9LEH9_HORVU
M10983_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM9_01
0.708 0.708
Q08711_PETHY
M10999_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.708 0.708
Q8VWZ3_MALDO
M11025_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.708 0.708
MADS3_ORYSJ
M10963_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.708 0.708
AG_PETHY
M10994_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.708 0.708
SHP2
M10914_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SHP2_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla000705 MADS box 10 57

Links

Other MADS box family TFs
Other Citrullus lanatus TFs

254 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_29383 Aegilops tauschii F775_29383 I 0.708
F775_00385 Aegilops tauschii F775_00385 I 0.729
F775_08627 Aegilops tauschii F775_08627 I 0.708
F775_23758 Aegilops tauschii F775_23758 I 0.729
F775_27566 Aegilops tauschii F775_27566 I 0.708
F775_27908 Aegilops tauschii F775_27908 I 0.708
F775_29801 Aegilops tauschii F775_29801 I 0.708
AMTR_s00021p00254030 Amborella trichopoda AMTR_s00021p00254030 I 0.708
Aquca_022_00039 Aquilegia coerulea Aquca_022_00039 I 0.708
SHP2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002019 I 0.708
SHP1 Arabidopsis lyrata fgenesh2_kg.5__2325__AT3G58780.1 I 0.708
AG Arabidopsis lyrata scaffold_702516.1 I 0.708
STK Arabidopsis lyrata fgenesh2_kg.6__2975__AT4G09960.3 I 0.708
SEP2 Arabidopsis lyrata scaffold_300166.1 I 0.708
SEP2 Arabidopsis thaliana AT3G02310 D 0.708
AGL1 Arabidopsis thaliana AT3G58780 D 0.708
STK Arabidopsis thaliana AT4G09960 I 0.708
AG Arabidopsis thaliana AT4G18960 D 0.708
SHP2 Arabidopsis thaliana AT2G42830 D 0.708
Bostr.1460s0147 Boechera stricta Bostr.1460s0147 I 0.708
Bostr.20903s0120 Boechera stricta Bostr.20903s0120 I 0.708
Bostr.25463s0328 Boechera stricta Bostr.25463s0328 I 0.708
Bostr.25993s0500 Boechera stricta Bostr.25993s0500 I 0.708
Bostr.30275s0374 Boechera stricta Bostr.30275s0374 I 0.708
BRADI3G41260 Brachypodium distachyon BRADI3G41260 I 0.708
BRADI3G41297 Brachypodium distachyon BRADI3G41297 I 0.708
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
BRADI2G32910 Brachypodium distachyon BRADI2G32910 I 0.708
BRADI2G06330 Brachypodium distachyon BRADI2G06330 I 0.729
BRADI1G77020 Brachypodium distachyon BRADI1G77020 I 0.708
Bo1g157450 Brassica oleracea Bo1g157450 I 0.708
Bo3g157470 Brassica oleracea Bo3g157470 I 0.708
Bo1g020110 Brassica oleracea Bo1g020110 I 0.708
Bo00962s030 Brassica oleracea Bo00962s030 I 0.708
Bo4g017290 Brassica oleracea Bo4g017290 I 0.708
Bo5g152700 Brassica oleracea Bo5g152700 I 0.708
Bo8g092930 Brassica oleracea Bo8g092930 I 0.708
Bo4g108190 Brassica oleracea Bo4g108190 I 0.708
Bra007419 Brassica rapa Bra007419 I 0.708
Bra039170 Brassica rapa Bra039170 I 0.708
Bra037895 Brassica rapa Bra037895 I 0.708
Bra021470 Brassica rapa Bra021470 I 0.708
Bra014552 Brassica rapa Bra014552 I 0.708
Bra013364 Brassica rapa Bra013364 I 0.708
Bra012564 Brassica rapa Bra012564 I 0.708
Bra000392 Brassica rapa Bra000392 I 0.708
Bra004716 Brassica rapa Bra004716 I 0.708
PK01025.1 Cannabis sativa PK01025.1 I 0.708
PK15717.1 Cannabis sativa PK15717.1 I 0.708
PK24532.1 Cannabis sativa PK24532.1 I 0.708
PK28790.1 Cannabis sativa PK28790.1 I 0.729
Cagra.0202s0031 Capsella grandiflora Cagra.0202s0031 I 0.708
Cagra.1194s0071 Capsella grandiflora Cagra.1194s0071 I 0.708
Cagra.21079s0001 Capsella grandiflora Cagra.21079s0001 I 0.708
Cagra.4960s0003 Capsella grandiflora Cagra.4960s0003 I 0.708
Cagra.9536s0004 Capsella grandiflora Cagra.9536s0004 I 0.708
Carubv10003771m.g Capsella rubella Carubv10003771m.g I 0.708
Carubv10014470m.g Capsella rubella Carubv10014470m.g I 0.708
Carubv10025002m.g Capsella rubella Carubv10025002m.g I 0.708
Carubv10019520m.g Capsella rubella Carubv10019520m.g I 0.708
Carubv10005558m.g Capsella rubella Carubv10005558m.g I 0.708
evm.TU.supercontig_50.73 Carica papaya evm.TU.supercontig_50.73 I 0.708
Ca_00445 Cicer arietinum Ca_00445 I 0.708
Ca_08639 Cicer arietinum Ca_08639 I 0.708
Ca_25684 Cicer arietinum Ca_25684 I 0.729
Ca_11363 Cicer arietinum Ca_11363 I 0.708
Cla019929 Citrullus lanatus Cla019929 I 0.708
Cla009886 Citrullus lanatus Cla009886 I 0.708
Cla013702 Citrullus lanatus Cla013702 I 0.708
Ciclev10033176m.g Citrus clementina Ciclev10033176m.g I 0.708
orange1.1g038783m.g Citrus sinensis orange1.1g038783m.g I 0.708
orange1.1g036452m.g Citrus sinensis orange1.1g036452m.g I 0.708
Cucsa.212720 Cucumis sativus Cucsa.212720 I 0.708
Cucsa.139620 Cucumis sativus Cucsa.139620 I 0.708
Cucsa.061700 Cucumis sativus Cucsa.061700 I 0.708
Cucsa.349650 Cucumis sativus Cucsa.349650 I 0.875
Cucsa.047280 Cucumis sativus Cucsa.047280 I 0.708
Eucgr.K01195 Eucalyptus grandis Eucgr.K01195 I 0.708
Eucgr.F02981 Eucalyptus grandis Eucgr.F02981 I 0.708
Thhalv10017047m.g Eutrema salsugineum Thhalv10017047m.g I 0.708
Thhalv10021390m.g Eutrema salsugineum Thhalv10021390m.g I 0.708
Thhalv10026704m.g Eutrema salsugineum Thhalv10026704m.g I 0.708
Thhalv10028938m.g Eutrema salsugineum Thhalv10028938m.g I 0.708
Thhalv10006196m.g Eutrema salsugineum Thhalv10006196m.g I 0.708
gene24494-v1.0-hybrid Fragaria vesca gene24494-v1.0-hybrid I 0.708
gene24852-v1.0-hybrid Fragaria vesca gene24852-v1.0-hybrid I 0.729
gene01336-v1.0-hybrid Fragaria vesca gene01336-v1.0-hybrid I 0.729
GLYMA18G12590 Glycine max GLYMA18G12590 I 0.729
GLYMA05G29595 Glycine max GLYMA05G29595 I 0.708
GLYMA02G45730 Glycine max GLYMA02G45730 I 0.729
GLYMA04G43640 Glycine max GLYMA04G43640 I 0.708
GLYMA06G48270 Glycine max GLYMA06G48270 I 0.708
GLYMA08G12730 Glycine max GLYMA08G12730 I 0.708
GLYMA08G42300 Glycine max GLYMA08G42300 I 0.729
GLYMA13G29510 Glycine max GLYMA13G29510 I 0.708
GLYMA14G03100 Glycine max GLYMA14G03100 I 0.729
GLYMA15G09500 Glycine max GLYMA15G09500 I 0.708
Gorai.006G268400 Gossypium raimondii Gorai.006G268400 I 0.708
Gorai.009G288000 Gossypium raimondii Gorai.009G288000 I 0.708
Gorai.011G035500 Gossypium raimondii Gorai.011G035500 I 0.729
Gorai.012G042600 Gossypium raimondii Gorai.012G042600 I 0.708
Gorai.N017200 Gossypium raimondii Gorai.N017200 I 0.708
Gorai.009G265100 Gossypium raimondii Gorai.009G265100 I 0.708
MLOC_57700 Hordeum vulgare MLOC_57700 I 0.729
MLOC_5375 Hordeum vulgare MLOC_5375 I 0.729
Q9LEH9_HORVU Hordeum vulgare Q9LEH9_HORVU D 0.708
MLOC_76418 Hordeum vulgare MLOC_76418 I 0.750
MLOC_56472 Hordeum vulgare MLOC_56472 I 0.708
LPERR08G18330 Leersia perrieri LPERR08G18330 I 0.729
LPERR02G00370 Leersia perrieri LPERR02G00370 I 0.729
LPERR05G05550 Leersia perrieri LPERR05G05550 I 0.708
LPERR01G06160 Leersia perrieri LPERR01G06160 I 0.708
Lus10031665.g Linum usitatissimum Lus10031665.g I 0.708
Lus10027404.g Linum usitatissimum Lus10027404.g I 0.708
Lus10008264.g Linum usitatissimum Lus10008264.g I 0.708
Lus10005302.g Linum usitatissimum Lus10005302.g I 0.708
chr6.CM0836.320.nc Lotus japonicus chr6.CM0836.320.nc I 0.708
chr6.CM0118.440.nd Lotus japonicus chr6.CM0118.440.nd I 0.708
chr4.CM0046.610.nc Lotus japonicus chr4.CM0046.610.nc I 0.729
chr3.CM0129.40.nc Lotus japonicus chr3.CM0129.40.nc I 0.708
chr2.CM0099.100.nc Lotus japonicus chr2.CM0099.100.nc I 0.750
MDP0000250080 Malus domestica MDP0000250080 I 0.729
MDP0000324259 Malus domestica MDP0000324259 I 0.708
MDP0000186558 Malus domestica MDP0000186558 I 0.771
MDP0000218227 Malus domestica MDP0000218227 I 0.771
MDP0000242009 Malus domestica MDP0000242009 I 0.729
MDP0000289858 Malus domestica MDP0000289858 I 0.708
MDP0000324166 Malus domestica MDP0000324166 I 0.729
MDP0000605482 Malus domestica MDP0000605482 I 0.708
Q8VWZ2_MALDO Malus domestica Q8VWZ2_MALDO D 0.729
Q8VWZ3_MALDO Malus domestica Q8VWZ3_MALDO D 0.708
cassava23035.valid.m1 Manihot esculenta cassava23035.valid.m1 I 0.708
cassava2637.m1 Manihot esculenta cassava2637.m1 I 0.708
cassava10048.m1 Manihot esculenta cassava10048.m1 I 0.708
cassava9590.m1 Manihot esculenta cassava9590.m1 I 0.708
cassava21103.m1 Manihot esculenta cassava21103.m1 I 0.708
cassava10843.m1 Manihot esculenta cassava10843.m1 I 0.708
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.729
cassava21102.m1 Manihot esculenta cassava21102.m1 I 0.708
MTR_2g017865 Medicago truncatula MTR_2g017865 I 0.708
MTR_8g087860 Medicago truncatula MTR_8g087860 I 0.708
MTR_3g452380 Medicago truncatula MTR_3g452380 I 0.729
MTR_3g084980 Medicago truncatula MTR_3g084980 I 0.708
MTR_3g005530 Medicago truncatula MTR_3g005530 I 0.708
mgf000475m Mimulus guttatus mgf000475m I 0.708
mgf004692m Mimulus guttatus mgf004692m I 0.708
mgf012166m Mimulus guttatus mgf012166m I 0.708
mgf003296m Mimulus guttatus mgf003296m I 0.708
GSMUA_Achr5G06590_001 Musa acuminata GSMUA_Achr5G06590_001 I 0.729
GSMUA_Achr5G16870_001 Musa acuminata GSMUA_Achr5G16870_001 I 0.708
GSMUA_Achr9G01370_001 Musa acuminata GSMUA_Achr9G01370_001 I 0.708
GSMUA_Achr10G14160_001 Musa acuminata GSMUA_Achr10G14160_001 I 0.729
AG_TOBAC Nicotiana tabacum AG_TOBAC D 0.708
OBART02G00360 Oryza barthii OBART02G00360 I 0.708
OBART01G06520 Oryza barthii OBART01G06520 I 0.708
OBART05G06600 Oryza barthii OBART05G06600 I 0.729
OB08G28340 Oryza brachyantha OB08G28340 I 0.708
OB01G16550 Oryza brachyantha OB01G16550 I 0.708
OB05G16140 Oryza brachyantha OB05G16140 I 0.708
ORGLA02G0003200 Oryza glaberrima ORGLA02G0003200 I 0.708
ORGLA01G0061900 Oryza glaberrima ORGLA01G0061900 I 0.708
OGLUM01G07510 Oryza glumaepatula OGLUM01G07510 I 0.708
OGLUM05G06900 Oryza glumaepatula OGLUM05G06900 I 0.729
OGLUM02G00350 Oryza glumaepatula OGLUM02G00350 I 0.708
BGIOSGA002178 Oryza indica BGIOSGA002178 I 0.708
BGIOSGA018621 Oryza indica BGIOSGA018621 I 0.750
BGIOSGA007336 Oryza indica BGIOSGA007336 I 0.708
BGIOSGA007333 Oryza indica BGIOSGA007333 I 0.708
OLONG_001786 Oryza longistaminata OLONG_001786 I 0.708
OLONG_018464 Oryza longistaminata OLONG_018464 I 0.729
OLONG_001300 Oryza longistaminata OLONG_001300 I 0.708
OMERI02G09250 Oryza meridionalis OMERI02G09250 I 0.708
OMERI05G05900 Oryza meridionalis OMERI05G05900 I 0.729
OMERI01G06630 Oryza meridionalis OMERI01G06630 I 0.708
ONIVA02G00370 Oryza nivara ONIVA02G00370 I 0.708
ONIVA01G08650 Oryza nivara ONIVA01G08650 I 0.708
ONIVA05G07370 Oryza nivara ONIVA05G07370 I 0.729
OPUNC02G00040 Oryza punctata OPUNC02G00040 I 0.729
OPUNC05G06200 Oryza punctata OPUNC05G06200 I 0.708
OPUNC08G18260 Oryza punctata OPUNC08G18260 I 0.708
ORUFI05G07100 Oryza rufipogon ORUFI05G07100 I 0.750
ORUFI01G07080 Oryza rufipogon ORUFI01G07080 I 0.708
ORUFI02G00390 Oryza rufipogon ORUFI02G00390 I 0.708
OS01G0201700 Oryza sativa OS01G0201700 I 0.708
MADS3_ORYSJ Oryza sativa MADS3_ORYSJ D 0.708
OS02G0104100 Oryza sativa OS02G0104100 I 0.708
OS05G0203800 Oryza sativa OS05G0203800 I 0.750
Pavir.Ea00226 Panicum virgatum Pavir.Ea00226 I 0.708
Pavir.Ea01057 Panicum virgatum Pavir.Ea01057 I 0.708
Pavir.Eb00241 Panicum virgatum Pavir.Eb00241 I 0.708
Pavir.Ca00579 Panicum virgatum Pavir.Ca00579 I 0.708
Pavir.J07457 Panicum virgatum Pavir.J07457 I 0.708
Pavir.J04815 Panicum virgatum Pavir.J04815 I 0.708
Q08711_PETHY Petunia x hybrida Q08711_PETHY D 0.708
AG_PETHY Petunia x hybrida AG_PETHY D 0.708
POPTR_0013s09960 Populus trichocarpa POPTR_0013s09960 I 0.708
POPTR_0004s06310 Populus trichocarpa POPTR_0004s06310 I 0.729
POPTR_0011s03150 Populus trichocarpa POPTR_0011s03150 I 0.708
Pm014563 Prunus mume Pm014563 I 0.708
Pm010346 Prunus mume Pm010346 I 0.729
PRUPE_ppa010578mg Prunus persica PRUPE_ppa010578mg I 0.708
PRUPE_ppa015338mg Prunus persica PRUPE_ppa015338mg I 0.729
PRUPE_ppa010595mg Prunus persica PRUPE_ppa010595mg I 0.729
SapurV1A.0157s0170 Salix purpurea SapurV1A.0157s0170 I 0.708
SapurV1A.2206s0010 Salix purpurea SapurV1A.2206s0010 I 0.708
SapurV1A.0945s0100 Salix purpurea SapurV1A.0945s0100 I 0.708
SapurV1A.0323s0170 Salix purpurea SapurV1A.0323s0170 I 0.708
SapurV1A.0029s0080 Salix purpurea SapurV1A.0029s0080 I 0.729
SapurV1A.0383s0080 Salix purpurea SapurV1A.0383s0080 I 0.708
Si023516m.g Setaria italica Si023516m.g I 0.708
Si019985m.g Setaria italica Si019985m.g I 0.708
Solyc07g055920.2 Solanum lycopersicum Solyc07g055920.2 I 0.708
Solyc02g089200.2 Solanum lycopersicum Solyc02g089200.2 I 0.708
Solyc02g071730.2 Solanum lycopersicum Solyc02g071730.2 I 0.750
PGSC0003DMG400017295 Solanum tuberosum PGSC0003DMG400017295 I 0.708
PGSC0003DMG400001377 Solanum tuberosum PGSC0003DMG400001377 I 0.708
PGSC0003DMG400028442 Solanum tuberosum PGSC0003DMG400028442 I 0.729
Sb04g000500 Sorghum bicolor Sb04g000500 I 0.708
Sb03g002525 Sorghum bicolor Sb03g002525 I 0.708
Sb07g026180 Sorghum bicolor Sb07g026180 I 0.708
Sb09g006360 Sorghum bicolor Sb09g006360 I 0.708
TCM_001841 Theobroma cacao TCM_001841 I 0.708
TCM_014337 Theobroma cacao TCM_014337 I 0.708
TCM_017242 Theobroma cacao TCM_017242 I 0.708
TCM_036541 Theobroma cacao TCM_036541 I 0.708
TCM_029596 Theobroma cacao TCM_029596 I 0.708
TCM_008716 Theobroma cacao TCM_008716 I 0.771
Traes_1DL_D5BBCA2D0 Triticum aestivum Traes_1DL_D5BBCA2D0 I 0.708
Traes_1BS_1202C8C0D Triticum aestivum Traes_1BS_1202C8C0D I 0.708
Traes_1AL_6F5982F88 Triticum aestivum Traes_1AL_6F5982F88 I 0.708
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.708
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I 0.767
Traes_7AS_F568FCBF1 Triticum aestivum Traes_7AS_F568FCBF1 I 0.739
Traes_7DS_4AF5C695F Triticum aestivum Traes_7DS_4AF5C695F I 0.708
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.708
Traes_1AS_985BB33A1 Triticum aestivum Traes_1AS_985BB33A1 I 0.708
Traes_1DS_F22A3DB6A Triticum aestivum Traes_1DS_F22A3DB6A I 0.708
Traes_7DS_4DF7EB08F Triticum aestivum Traes_7DS_4DF7EB08F I 0.729
Traes_3AS_55E9080C2 Triticum aestivum Traes_3AS_55E9080C2 I 0.708
Traes_3DS_51A589227 Triticum aestivum Traes_3DS_51A589227 I 0.708
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I 0.708
TRIUR3_18962 Triticum urartu TRIUR3_18962 I 0.708
TRIUR3_28216 Triticum urartu TRIUR3_28216 I 0.708
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.708
TRIUR3_22964 Triticum urartu TRIUR3_22964 I 0.708
TRIUR3_21732 Triticum urartu TRIUR3_21732 I 0.721
TRIUR3_34584 Triticum urartu TRIUR3_34584 I 0.708
AG Vitis vinifera VIT_10s0003g02070 I 0.708
VIT_12s0142g00360 Vitis vinifera VIT_12s0142g00360 I 0.708
GRMZM2G052890 Zea mays GRMZM2G052890 I 0.708
GRMZM2G070034 Zea mays GRMZM2G070034 I 0.708
GRMZM2G097059 Zea mays GRMZM2G097059 I 0.708
GRMZM2G359952 Zea mays GRMZM2G359952 I 0.729
GRMZM2G010669 Zea mays GRMZM2G010669 I 0.708