Cla005226 (Citrullus lanatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cla005226 T256945_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla005226 MADS box 10 55

Links

Other MADS box family TFs
Other Citrullus lanatus TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30128.m008984 Ricinus communis 30128.m008984 I 0.771
30199.m000879 Ricinus communis 30199.m000879 I 0.822
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.711
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.778
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.756
AGL80 Arabidopsis thaliana AT5G48670 D 0.800
Bo2g104810 Brassica oleracea Bo2g104810 I 0.778
Bo9g078450 Brassica oleracea Bo9g078450 I 0.778
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.733
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.822
Bra018490 Brassica rapa Bra018490 I 0.800
Bra029469 Brassica rapa Bra029469 I 0.778
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.708
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.708
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.867
Ca_06495 Cicer arietinum Ca_06495 I 0.756
Ca_13275 Cicer arietinum Ca_13275 I 0.844
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.800
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.889
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.889
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.822
Cla009163 Citrullus lanatus Cla009163 I 0.800
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.956
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.733
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.844
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.822
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.844
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.848
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.711
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.711
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.756
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.778
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.733
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.778
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.800
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.733
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.733
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.778
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.733
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.778
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.756
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.711
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.778
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.800
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.733
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.756
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.711
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.733
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.800
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.756
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.711
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.711
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.822
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.778
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.844
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.822
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.867
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.889
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.733
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.800
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.711
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.711
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.711
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.711
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.822
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.867
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.778
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.822
Lus10022325.g Linum usitatissimum Lus10022325.g N 0.711
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.844
MDP0000846004 Malus domestica MDP0000846004 I 0.822
MDP0000925348 Malus domestica MDP0000925348 I 0.844
mgf026186m Mimulus guttatus mgf026186m I 0.756
MTR_2g035610 Medicago truncatula MTR_2g035610 N 0.711
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.844
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.822
Pm003257 Prunus mume Pm003257 I 0.733
Pm003258 Prunus mume Pm003258 N 0.711
Pm004396 Prunus mume Pm004396 I 0.844
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.844
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.911
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.889
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.844
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.733
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.889
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.844
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.844
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.778
TCM_025670 Theobroma cacao TCM_025670 I 0.733
TCM_025671 Theobroma cacao TCM_025671 I 0.756
TCM_026842 Theobroma cacao TCM_026842 I 0.844
TCM_026845 Theobroma cacao TCM_026845 I 0.733
TCM_042799 Theobroma cacao TCM_042799 I 0.778
TCM_042848 Theobroma cacao TCM_042848 N 0.711
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.756
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.711
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.778
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.822
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.822
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.733
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.889