Cagra.5647s0017 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.5647s0017 T257709_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.5647s0017.1.p MADS box 16 63

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10011216m.g Capsella rubella Carubv10011216m.g N 0.958
Bostr.15697s0292 Boechera stricta Bostr.15697s0292 N 0.896
AGL85 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002660 N 0.875
AGL64 Arabidopsis thaliana AT1G29962 N 0.875
Cagra.18025s0001 Capsella grandiflora Cagra.18025s0001 N 0.854
Carubv10002683m.g Capsella rubella Carubv10002683m.g N 0.854
Carubv10022123m.g Capsella rubella Carubv10022123m.g N 0.833
Carubv10012214m.g Capsella rubella Carubv10012214m.g N 0.833
Carubv10021725m.g Capsella rubella Carubv10021725m.g N 0.833
Carubv10022431m.g Capsella rubella Carubv10022431m.g N 0.812
Carubv10012479m.g Capsella rubella Carubv10012479m.g N 0.812
Carubv10021446m.g Capsella rubella Carubv10021446m.g N 0.812
Carubv10022052m.g Capsella rubella Carubv10022052m.g N 0.812
Carubv10010833m.g Capsella rubella Carubv10010833m.g N 0.812
Carubv10010438m.g Capsella rubella Carubv10010438m.g N 0.812
Carubv10010430m.g Capsella rubella Carubv10010430m.g N 0.812
AGL85 Arabidopsis thaliana AT1G54760 N 0.808
Carubv10021362m.g Capsella rubella Carubv10021362m.g N 0.794
Cagra.12398s0004 Capsella grandiflora Cagra.12398s0004 N 0.792
Carubv10002712m.g Capsella rubella Carubv10002712m.g N 0.792
Carubv10021425m.g Capsella rubella Carubv10021425m.g N 0.771
AGL59 Arabidopsis thaliana AT1G28460 N 0.729
Thhalv10009431m.g Eutrema salsugineum Thhalv10009431m.g N 0.729
Bo5g061120 Brassica oleracea Bo5g061120 N 0.729
Carubv10021838m.g Capsella rubella Carubv10021838m.g N 0.729
Carubv10002787m.g Capsella rubella Carubv10002787m.g N 0.727
AGL58 Arabidopsis thaliana AT1G28450 N 0.708
Bra032347 Brassica rapa Bra032347 N 0.708
Carubv10021267m.g Capsella rubella Carubv10021267m.g N 0.704