Eucgr.F02145 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.F02145 T257966_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.812 0.812
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.812 0.812
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.812 0.812
A1YJE4_HORVD
M10900_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM10_01
0.729 0.729
AGL13
M06989_2.00
Arabidopsis thaliana
WTWCYHAAAAWRGWAADW

WHTTWCYWTTTTDRGWAW
Dap-seq
OMalley et al.(2016)
AGL13_col_b
0.708 0.708
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND

HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.708 0.708
SOC1
M10915_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.708 0.708
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.F02145.1 MADS box 10 57
Eucgr.F02145.2 MADS box 10 57

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29838.m001690 Ricinus communis 29838.m001690 I 0.708
A1YJE4_HORVD Hordeum vulgare A1YJE4_HORVD D 0.729
AGL13 Arabidopsis lyrata fgenesh2_kg.5__2575__AT3G61120.1 I 0.708
AGL13 Arabidopsis thaliana AT3G61120 D 0.708
AGL17 Arabidopsis thaliana AT2G22630 I 0.729
AGL17 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4000157 I 0.729
AGL18 Arabidopsis thaliana AT3G57390 I 0.708
AGL20 Arabidopsis lyrata scaffold_403512.1 I 0.708
AGL21 Arabidopsis thaliana AT4G37940 I 0.729
AGL21 Arabidopsis lyrata fgenesh2_kg.7__253__AT4G37940.1 I 0.729
AGL24 Arabidopsis thaliana AT4G24540 I 0.812
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.812
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.771
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.729
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.771
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.750
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.771
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.708
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.729
Bo1g003270 Brassica oleracea Bo1g003270 I 0.729
Bo1g039080 Brassica oleracea Bo1g039080 I 0.833
Bo2g160980 Brassica oleracea Bo2g160980 I 0.708
Bo3g038880 Brassica oleracea Bo3g038880 I 0.708
Bo3g153080 Brassica oleracea Bo3g153080 I 0.729
Bo4g149800 Brassica oleracea Bo4g149800 I 0.792
Bo4g195720 Brassica oleracea Bo4g195720 I 0.708
Bo7g025330 Brassica oleracea Bo7g025330 I 0.708
Bo7g109590 Brassica oleracea Bo7g109590 I 0.812
Bo8g100930 Brassica oleracea Bo8g100930 I 0.708
Bo8g101000 Brassica oleracea Bo8g101000 I 0.812
Bostr.10199s0104 Boechera stricta Bostr.10199s0104 I 0.708
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.812
Bostr.19427s0033 Boechera stricta Bostr.19427s0033 I 0.708
Bostr.25542s0226 Boechera stricta Bostr.25542s0226 I 0.708
Bostr.25993s0208 Boechera stricta Bostr.25993s0208 I 0.708
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.792
Bra000393 Brassica rapa Bra000393 I 0.708
Bra010623 Brassica rapa Bra010623 I 0.729
Bra011797 Brassica rapa Bra011797 I 0.729
Bra013812 Brassica rapa Bra013812 I 0.833
Bra019221 Brassica rapa Bra019221 I 0.812
Bra029365 Brassica rapa Bra029365 I 0.708
Bra030222 Brassica rapa Bra030222 I 0.708
Bra030228 Brassica rapa Bra030228 I 0.792
Bra038511 Brassica rapa Bra038511 I 0.812
Bra039324 Brassica rapa Bra039324 I 0.708
Bra039921 Brassica rapa Bra039921 I 0.708
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.708
BRADI3G58220 Brachypodium distachyon BRADI3G58220 I 0.729
Cagra.0050s0134 Capsella grandiflora Cagra.0050s0134 I 0.708
Cagra.0542s0040 Capsella grandiflora Cagra.0542s0040 I 0.708
Cagra.0578s0070 Capsella grandiflora Cagra.0578s0070 I 0.708
Cagra.1080s0003 Capsella grandiflora Cagra.1080s0003 I 0.729
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.812
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.792
Cagra.4003s0006 Capsella grandiflora Cagra.4003s0006 I 0.708
Cagra.4348s0011 Capsella grandiflora Cagra.4348s0011 I 0.708
Cagra.5414s0059 Capsella grandiflora Cagra.5414s0059 I 0.729
Carubv10002792m.g Capsella rubella Carubv10002792m.g I 0.708
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.792
Carubv10006453m.g Capsella rubella Carubv10006453m.g I 0.729
Carubv10017886m.g Capsella rubella Carubv10017886m.g I 0.708
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.812
Carubv10023996m.g Capsella rubella Carubv10023996m.g I 0.729
Carubv10024046m.g Capsella rubella Carubv10024046m.g I 0.708
Carubv10027142m.g Capsella rubella Carubv10027142m.g I 0.708
Carubv10027529m.g Capsella rubella Carubv10027529m.g I 0.729
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.812
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.792
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.792
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.792
Ca_01491 Cicer arietinum Ca_01491 I 0.750
Ca_12416 Cicer arietinum Ca_12416 I 0.750
Ca_21060 Cicer arietinum Ca_21060 I 0.771
chr4.CM0126.630.nc Lotus japonicus chr4.CM0126.630.nc I 0.708
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.708
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.792
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.750
Cla014322 Citrullus lanatus Cla014322 I 0.812
Cla022499 Citrullus lanatus Cla022499 I 0.792
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.812
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.771
Cucsa.331840 Cucumis sativus Cucsa.331840 I 0.708
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.708
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.729
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.750
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.896
Eucgr.F02146 Eucalyptus grandis Eucgr.F02146 I 0.854
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.729
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.708
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.792
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.771
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.708
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.708
F775_26069 Aegilops tauschii F775_26069 I 0.708
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I 0.723
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I 0.745
gene05180-v1.0-hybrid Fragaria vesca gene05180-v1.0-hybrid I 0.702
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.745
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.771
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.792
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.771
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.708
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.771
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.771
GLYMA13G33031 Glycine max GLYMA13G33031 I 0.708
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.708
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.833
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.708
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.750
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.708
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.750
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.833
GRMZM2G044408 Zea mays GRMZM2G044408 I 0.708
GRMZM2G046885 Zea mays GRMZM2G046885 I 0.750
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.729
GRMZM2G370777 Zea mays GRMZM2G370777 I 0.729
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.729
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.771
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.771
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.750
LPERR02G27330 Leersia perrieri LPERR02G27330 I 0.750
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.750
LPERR04G04720 Leersia perrieri LPERR04G04720 I 0.708
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.812
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.812
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.708
MDP0000148857 Malus domestica MDP0000148857 I 0.708
MDP0000209705 Malus domestica MDP0000209705 I 0.771
MDP0000233948 Malus domestica MDP0000233948 I 0.771
MDP0000255146 Malus domestica MDP0000255146 I 0.750
MDP0000314765 Malus domestica MDP0000314765 I 0.708
MDP0000322567 Malus domestica MDP0000322567 I 0.708
mgb000125m Mimulus guttatus mgb000125m I 0.708
mgf007519m Mimulus guttatus mgf007519m I 0.729
mgf015964m Mimulus guttatus mgf015964m I 0.812
mgf019667m Mimulus guttatus mgf019667m I 0.708
mgf021543m Mimulus guttatus mgf021543m I 0.708
mgf023192m Mimulus guttatus mgf023192m I 0.729
mgf025830m Mimulus guttatus mgf025830m I 0.750
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.792
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.792
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.708
OB04G15510 Oryza brachyantha OB04G15510 I 0.708
OBART03G06320 Oryza barthii OBART03G06320 I 0.729
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.729
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.729
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.729
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.729
OPUNC04G05760 Oryza punctata OPUNC04G05760 I 0.708
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.771
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.792
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.708
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.771
ORGLA02G0288600 Oryza glaberrima ORGLA02G0288600 I 0.729
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.729
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.729
OS03G0186600 Oryza sativa OS03G0186600 I 0.729
Pavir.Da01333 Panicum virgatum Pavir.Da01333 I 0.750
Pavir.Db01833 Panicum virgatum Pavir.Db01833 I 0.708
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.729
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.729
Pavir.J13837 Panicum virgatum Pavir.J13837 I 0.729
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.854
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.812
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.792
PK02524.1 Cannabis sativa PK02524.1 I 0.705
PK11571.1 Cannabis sativa PK11571.1 I 0.729
PK20651.1 Cannabis sativa PK20651.1 I 0.771
PK27158.1 Cannabis sativa PK27158.1 I 0.714
Pm002166 Prunus mume Pm002166 I 0.792
Pm004416 Prunus mume Pm004416 I 0.729
Pm004417 Prunus mume Pm004417 I 0.708
Pm004418 Prunus mume Pm004418 I 0.708
Pm004419 Prunus mume Pm004419 I 0.708
Pm004420 Prunus mume Pm004420 I 0.708
Pm022002 Prunus mume Pm022002 I 0.750
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.771
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.812
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.729
PRUPE_ppa010758mg Prunus persica PRUPE_ppa010758mg I 0.708
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.729
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.792
PRUPE_ppa011123mg Prunus persica PRUPE_ppa011123mg I 0.708
PRUPE_ppa018667mg Prunus persica PRUPE_ppa018667mg I 0.708
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.729
PRUPE_ppb017585mg Prunus persica PRUPE_ppb017585mg I 0.708
Q9ATE3_PETHY Petunia x hybrida Q9ATE3_PETHY D 0.708
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.771
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.708
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.812
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.729
Sb04g033930 Sorghum bicolor Sb04g033930 I 0.729
Si007641m.g Setaria italica Si007641m.g I 0.729
Si017524m.g Setaria italica Si017524m.g I 0.729
Si037358m.g Setaria italica Si037358m.g I 0.729
SOC1 Arabidopsis thaliana AT2G45660 D 0.708
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.792
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.812
Solyc12g056460.1 Solanum lycopersicum Solyc12g056460.1 I 0.708
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.812
SVP Vitis vinifera VIT_00s0313g00070 I 0.812
SVP Arabidopsis thaliana AT2G22540 D 0.812
TCM_000992 Theobroma cacao TCM_000992 I 0.750
TCM_034501 Theobroma cacao TCM_034501 I 0.792
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.812
Thhalv10001632m.g Eutrema salsugineum Thhalv10001632m.g I 0.708
Thhalv10004954m.g Eutrema salsugineum Thhalv10004954m.g I 0.708
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.708
Thhalv10026139m.g Eutrema salsugineum Thhalv10026139m.g I 0.729
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.792
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.708
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.708
Traes_6AL_A93C6F2FC Triticum aestivum Traes_6AL_A93C6F2FC I 0.729
Traes_6DL_D8C9E421C Triticum aestivum Traes_6DL_D8C9E421C I 0.729
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.756
TT16 Arabidopsis thaliana AT5G23260 I 0.708
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.708
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.708