evm.TU.supercontig_117.19 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.supercontig_117.19 T258157_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_117.19 MADS box 10 55

Links

Other MADS box family TFs
Other Carica papaya TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000017984 Ailuropoda melanoleuca ENSAMEG00000017984 I 0.000
Alligator_sinensis_CCG015719.1 Alligator sinensis Alligator_sinensis_CCG015719.1 I 0.000
Alligator_sinensis_CCG004564.1 Alligator sinensis Alligator_sinensis_CCG004564.1 I 0.000
Alligator_sinensis_CCG003696.1 Alligator sinensis Alligator_sinensis_CCG003696.1 I 0.000
ENSAPLG00000009319 Anas platyrhynchos ENSAPLG00000009319 I 0.000
IRF6 Anolis carolinensis ENSACAG00000005931 I 0.000
Afo_R001981 Aptenodytes forsteri Afo_R001981 I 0.000
ENSAMXG00000004616 Astyanax mexicanus ENSAMXG00000004616 I 0.000
ENSP00000349770-D2 Bos grunniens ENSP00000349770-D2 I 0.000
IRF6 Bos taurus ENSBTAG00000002849 I 0.000
IRF6 Callithrix jacchus ENSCJAG00000015032 I 0.000
IRF6 Canis familiaris ENSCAFG00000011971 I 0.000
IRF6 Cavia porcellus ENSCPOG00000023829 I 0.000
Cmyd_10002838 Chelonia mydas Cmyd_10002838 I 0.000
Cmyd_10010684 Chelonia mydas Cmyd_10010684 I 0.000
ENSCSAG00000015263 Chlorocebus sabaeus ENSCSAG00000015263 I 0.000
IRF6 Choloepus hoffmanni ENSCHOG00000010399 I 0.000
irf6 Danio rerio ENSDARG00000101986 I 0.000
irf5 Danio rerio ENSDARG00000045681 I 0.000
IRF6 Dasypus novemcinctus ENSDNOG00000001694 I 0.000
Irf6 Dipodomys ordii ENSDORG00000008891 I 0.000
IRF6 Echinops telfairi ENSETEG00000008368 I 0.000
IRF6 Equus caballus ENSECAG00000007482 I 0.000
IRF6 Felis catus ENSFCAG00000015138 I 0.000
ENSGMOG00000007264 Gadus morhua ENSGMOG00000007264 I 0.000
ENSGMOG00000007988 Gadus morhua ENSGMOG00000007988 I 0.000
IRF6 Gallus gallus ENSGALG00000001405 D 0.000
irf6 Gasterosteus aculeatus ENSGACG00000000990 I 0.000
irf5 Gasterosteus aculeatus ENSGACG00000000695 I 0.000
IRF6 Gorilla gorilla ENSGGOG00000006214 I 0.000
IRF5 Homo sapiens ENSG00000128604 D 0.000
IRF6 Homo sapiens ENSG00000117595 D 0.000
ENSLACG00000018600 Latimeria chalumnae ENSLACG00000018600 I 0.000
ENSLACG00000005750 Latimeria chalumnae ENSLACG00000005750 I 0.000
ENSLOCG00000015563 Lepisosteus oculatus ENSLOCG00000015563 I 0.000
ENSLOCG00000011297 Lepisosteus oculatus ENSLOCG00000011297 I 0.000
IRF6 Loxodonta africana ENSLAFG00000001374 I 0.000
ENSP00000355988 Macaca fascicularis ENSP00000355988 I 0.000
IRF6 Macaca mulatta ENSMMUG00000022065 I 0.000
ENSMEUG00000014941 Macropus eugenii ENSMEUG00000014941 I 0.000
IRF6 Meleagris gallopavo ENSMGAG00000004431 D 0.000
IRF6 Microcebus murinus ENSMICG00000001233 I 0.000
IRF6 Monodelphis domestica ENSMODG00000002539 I 0.000
ENSMPUG00000003106 Mustela putorius furo ENSMPUG00000003106 I 0.000
Irf6 Mus musculus ENSMUSG00000026638 D 0.000
Myotis_brandtii_IRF6_10012270 Myotis brandtii Myotis_brandtii_IRF6_10012270 I 0.000
IRF6 Myotis lucifugus ENSMLUG00000004509 I 0.000
ENSNLEG00000001962 Nomascus leucogenys ENSNLEG00000001962 I 0.000
IRF6 Ochotona princeps ENSOPRG00000014295 I 0.000
Ogr12956 Ophisaurus gracilis Ogr12956 I 0.000
ENSONIG00000018961 Oreochromis niloticus ENSONIG00000018961 I 0.000
ENSONIG00000007600 Oreochromis niloticus ENSONIG00000007600 I 0.000
IRF6 Ornithorhynchus anatinus ENSOANG00000013718 I 0.000
IRF6 Oryctolagus cuniculus ENSOCUG00000004035 I 0.000
irf6 Oryzias latipes ENSORLG00000000511 I 0.000
IRF6 Otolemur garnettii ENSOGAG00000010708 I 0.000
ENSOARG00000012720 Ovis aries ENSOARG00000012720 I 0.000
ENSOARG00000020948 Ovis aries ENSOARG00000020948 I 0.000
IRF6 Pan troglodytes ENSPTRG00000001941 I 0.000
ENSPANG00000011328 Papio anubis ENSPANG00000011328 I 0.000
ENSPSIG00000003597 Pelodiscus sinensis ENSPSIG00000003597 I 0.000
ENSPFOG00000005876 Poecilia formosa ENSPFOG00000005876 I 0.000
ENSPFOG00000013528 Poecilia formosa ENSPFOG00000013528 I 0.000
ENSPFOG00000014077 Poecilia formosa ENSPFOG00000014077 I 0.000
Pvit_15428 Pogona vitticeps Pvit_15428 I 0.000
Pvit_14327 Pogona vitticeps Pvit_14327 I 0.000
ENSPPYG00000000253 Pongo abelii ENSPPYG00000000253 I 0.000
IRF6 Procavia capensis ENSPCAG00000006456 I 0.000
IRF6 Pteropus vampyrus ENSPVAG00000004865 I 0.000
Irf6 Rattus norvegicus ENSRNOG00000005082 I 0.000
IRF6 Sus scrofa ENSSSCG00000015612 I 0.000
IRF6 Taeniopygia guttata ENSTGUG00000001485 I 0.000
irf5 Takifugu rubripes ENSTRUG00000000641 I 0.000
irf6 Takifugu rubripes ENSTRUG00000006951 I 0.000
ENSTSYG00000010982 Tarsius syrichta ENSTSYG00000010982 I 0.000
irf5 Tetraodon nigroviridis ENSTNIG00000003346 I 0.000
irf6 Tetraodon nigroviridis ENSTNIG00000014635 I 0.000
IRF6 Tursiops truncatus ENSTTRG00000001121 I 0.000
IRF6 Vicugna pacos ENSVPAG00000010247 I 0.000
irf6.S Xenopus laevis XB-GENE-876421 I 0.000
irf6.2.L Xenopus laevis XB-GENE-5910427 I 0.000
irf5.L Xenopus laevis XB-GENE-998629 D 0.000
irf6 Xenopus tropicalis XB-GENE-876410 I 0.000
irf5 Xenopus tropicalis XB-GENE-998624 I 0.000
irf6.2 Xenopus tropicalis XB-GENE-5910331 D 0.000
ENSXMAG00000007143 Xiphophorus maculatus ENSXMAG00000007143 I 0.000
ENSXMAG00000013056 Xiphophorus maculatus ENSXMAG00000013056 I 0.000