CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_117.19
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_117.19
T258157_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.778
0.778
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_117.19
MADS box
10
55
YIANDSSRKATYKKRKKGLMKKVSELSTLCGVNACLILYSPYDAEA
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_027_00068
Aquilegia coerulea
Aquca_027_00068
I
0.733
Aquca_007_00647
Aquilegia coerulea
Aquca_007_00647
I
0.733
Al_scaffold_0003_569
Arabidopsis lyrata
Al_scaffold_0003_569
I
0.756
AGL80
Arabidopsis thaliana
AT5G48670
D
0.729
Bostr.2392s0039
Boechera stricta
Bostr.2392s0039
I
0.756
Bostr.2570s0082
Boechera stricta
Bostr.2570s0082
I
0.750
Bo9g078450
Brassica oleracea
Bo9g078450
I
0.729
Bo2g104810
Brassica oleracea
Bo2g104810
I
0.750
Bra029469
Brassica rapa
Bra029469
I
0.729
Bra018490
Brassica rapa
Bra018490
I
0.771
evm.TU.contig_25049.2
Carica papaya
evm.TU.contig_25049.2
N
0.711
evm.TU.contig_31147
Carica papaya
evm.TU.contig_31147
I
0.727
evm.TU.contig_28448.4
Carica papaya
evm.TU.contig_28448.4
I
0.756
evm.TU.contig_27586
Carica papaya
evm.TU.contig_27586
I
0.773
evm.TU.contig_26058.2
Carica papaya
evm.TU.contig_26058.2
I
0.711
evm.TU.contig_26058.1
Carica papaya
evm.TU.contig_26058.1
I
0.711
evm.TU.contig_25049.5
Carica papaya
evm.TU.contig_25049.5
I
0.723
evm.TU.contig_35265
Carica papaya
evm.TU.contig_35265
I
0.727
evm.TU.contig_36181
Carica papaya
evm.TU.contig_36181
I
0.721
evm.TU.contig_37084
Carica papaya
evm.TU.contig_37084
I
0.739
evm.TU.supercontig_265.1
Carica papaya
evm.TU.supercontig_265.1
I
0.739
evm.TU.supercontig_185.9
Carica papaya
evm.TU.supercontig_185.9
I
0.711
evm.TU.supercontig_185.2
Carica papaya
evm.TU.supercontig_185.2
I
0.711
evm.TU.contig_25982.2
Carica papaya
evm.TU.contig_25982.2
I
0.711
evm.TU.supercontig_1750.2
Carica papaya
evm.TU.supercontig_1750.2
I
0.739
evm.TU.supercontig_1237.1
Carica papaya
evm.TU.supercontig_1237.1
I
0.733
evm.TU.supercontig_117.18
Carica papaya
evm.TU.supercontig_117.18
I
0.787
evm.TU.contig_44957
Carica papaya
evm.TU.contig_44957
I
0.711
evm.TU.contig_43368
Carica papaya
evm.TU.contig_43368
I
0.773
evm.TU.contig_40499.2
Carica papaya
evm.TU.contig_40499.2
I
0.733
evm.TU.contig_38146
Carica papaya
evm.TU.contig_38146
I
0.727
evm.TU.contig_24608
Carica papaya
evm.TU.contig_24608
I
0.711
Ca_08934
Cicer arietinum
Ca_08934
I
0.705
Ca_13275
Cicer arietinum
Ca_13275
I
0.756
Ca_06495
Cicer arietinum
Ca_06495
I
0.727
Cla005226
Citrullus lanatus
Cla005226
I
0.756
Cucsa.050930
Cucumis sativus
Cucsa.050930
I
0.778
Eucgr.E01734
Eucalyptus grandis
Eucgr.E01734
I
0.739
Eucgr.B01824
Eucalyptus grandis
Eucgr.B01824
I
0.733
Eucgr.E01733
Eucalyptus grandis
Eucgr.E01733
I
0.761
Eucgr.E01737
Eucalyptus grandis
Eucgr.E01737
I
0.783
Eucgr.E01736
Eucalyptus grandis
Eucgr.E01736
I
0.756
Thhalv10022373m.g
Eutrema salsugineum
Thhalv10022373m.g
I
0.733
Thhalv10024119m.g
Eutrema salsugineum
Thhalv10024119m.g
I
0.729
Thhalv10023873m.g
Eutrema salsugineum
Thhalv10023873m.g
I
0.729
Thhalv10012000m.g
Eutrema salsugineum
Thhalv10012000m.g
I
0.708
gene18029-v1.0-hybrid
Fragaria vesca
gene18029-v1.0-hybrid
I
0.729
GLYMA11G33460
Glycine max
GLYMA11G33460
I
0.756
GLYMA18G04760
Glycine max
GLYMA18G04760
I
0.778
Gorai.003G105500
Gossypium raimondii
Gorai.003G105500
N
0.702
Gorai.004G292000
Gossypium raimondii
Gorai.004G292000
I
0.723
Gorai.013G210200
Gossypium raimondii
Gorai.013G210200
I
0.750
Lus10014578.g
Linum usitatissimum
Lus10014578.g
I
0.800
Lus10032108.g
Linum usitatissimum
Lus10032108.g
I
0.729
LjSGA_018236.1
Lotus japonicus
LjSGA_018236.1
I
0.721
LjT40B16.70.nc
Lotus japonicus
LjT40B16.70.nc
I
0.711
LjSGA_147985.1
Lotus japonicus
LjSGA_147985.1
I
0.778
chr6.LjT19B22.120.nd
Lotus japonicus
chr6.LjT19B22.120.nd
I
0.733
LjSGA_104570.1
Lotus japonicus
LjSGA_104570.1
I
0.724
MDP0000925348
Malus domestica
MDP0000925348
I
0.778
MDP0000846004
Malus domestica
MDP0000846004
I
0.750
cassava15247.m1
Manihot esculenta
cassava15247.m1
I
0.711
cassava19828.m1
Manihot esculenta
cassava19828.m1
I
0.750
MTR_3g065100
Medicago truncatula
MTR_3g065100
I
0.756
mgf026186m
Mimulus guttatus
mgf026186m
I
0.773
GSMUA_Achr3G05500_001
Musa acuminata
GSMUA_Achr3G05500_001
I
0.711
PDK_20s1688321g001
Phoenix dactylifera
PDK_20s1688321g001
N
0.727
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.708
POPTR_0005s00420
Populus trichocarpa
POPTR_0005s00420
I
0.733
POPTR_0013s00350
Populus trichocarpa
POPTR_0013s00350
I
0.729
Pm004396
Prunus mume
Pm004396
I
0.778
PRUPE_ppa018168mg
Prunus persica
PRUPE_ppa018168mg
I
0.778
30199.m000879
Ricinus communis
30199.m000879
I
0.766
SapurV1A.0442s0180
Salix purpurea
SapurV1A.0442s0180
I
0.750
SapurV1A.0066s0310
Salix purpurea
SapurV1A.0066s0310
I
0.745
SapurV1A.0442s0190
Salix purpurea
SapurV1A.0442s0190
I
0.750
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.756
TCM_026842
Theobroma cacao
TCM_026842
I
0.756
VIT_14s0060g00300
Vitis vinifera
VIT_14s0060g00300
I
0.750