Gorai.004G292000 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.004G292000 T258401_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G292000.1 MADS box 10 56

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30128.m008984 Ricinus communis 30128.m008984 I 0.750
30199.m000879 Ricinus communis 30199.m000879 I 0.787
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.766
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.745
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.778
AGL80 Arabidopsis thaliana AT5G48670 D 0.750
Bo9g078450 Brassica oleracea Bo9g078450 I 0.723
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.745
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.750
Bra018490 Brassica rapa Bra018490 I 0.708
Bra029469 Brassica rapa Bra029469 I 0.723
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.822
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.812
Ca_06495 Cicer arietinum Ca_06495 I 0.886
Ca_08934 Cicer arietinum Ca_08934 I 0.750
Ca_13275 Cicer arietinum Ca_13275 I 0.844
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.723
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.771
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.771
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.761
Cla005226 Citrullus lanatus Cla005226 I 0.800
Cla009163 Citrullus lanatus Cla009163 I 0.702
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.702
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.778
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.761
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.783
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.745
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.804
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.809
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.739
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.733
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.733
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.723
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.702
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.787
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.756
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.756
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.909
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.723
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.766
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.745
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.766
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.733
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.795
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.733
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.791
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.818
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.745
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.818
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.745
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.711
evm.TU.supercontig_100.22 Carica papaya evm.TU.supercontig_100.22 N 0.708
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.745
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.723
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.723
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.766
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.761
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.733
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.723
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.745
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.762
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.739
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.711
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.761
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.766
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.787
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.745
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.723
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.778
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.766
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.750
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.745
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.792
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.766
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.822
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.844
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.851
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.702
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.809
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.851
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.792
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.733
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.791
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.761
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.704
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.711
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.778
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.787
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.766
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.745
MDP0000846004 Malus domestica MDP0000846004 I 0.729
MDP0000925348 Malus domestica MDP0000925348 I 0.766
mgf026186m Mimulus guttatus mgf026186m I 0.795
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.844
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.723
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.711
MTR_7g055940 Medicago truncatula MTR_7g055940 N 0.760
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.705
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.761
Pm003257 Prunus mume Pm003257 I 0.723
Pm003258 Prunus mume Pm003258 N 0.756
Pm004396 Prunus mume Pm004396 I 0.800
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.787
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.830
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.809
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.800
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.723
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.702
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.809
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.750
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.750
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.830
TCM_025670 Theobroma cacao TCM_025670 I 0.729
TCM_025671 Theobroma cacao TCM_025671 I 0.702
TCM_025674 Theobroma cacao TCM_025674 N 0.702
TCM_026842 Theobroma cacao TCM_026842 I 0.787
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.830
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.702
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.745
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.745
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.702
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.851