chr2.CM0250.170.nc (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr2.CM0250.170.nc T259322_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0250.170.nc MADS box 21 68

Links

Other MADS box family TFs
Other Lotus japonicus TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.729
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.723
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_28241.3 Carica papaya evm.TU.contig_28241.3 N 0.708
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.708
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.708
evm.TU.contig_35176.1 Carica papaya evm.TU.contig_35176.1 N 0.708
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.708
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.708
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.708
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.708
mgf018529m Mimulus guttatus mgf018529m N 0.729
mgf024307m Mimulus guttatus mgf024307m N 0.729
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.750
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.708
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.708
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.708
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.723
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.708
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.708
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.708
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.708
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.708
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.708
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.833
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
MDP0000221590 Malus domestica MDP0000221590 N 0.708
MDP0000168914 Malus domestica MDP0000168914 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.750
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.708
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.708
evm.TU.supercontig_625.2 Carica papaya evm.TU.supercontig_625.2 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.708
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.750
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.708
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.708
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.750
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.750
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.729
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.729
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.729
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.729
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.708
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.750
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.729
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.708
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.750
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.729
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.708
Bra022434 Brassica rapa Bra022434 N 0.708
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.708
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.708
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.708
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.729
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.729
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.729
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.705
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
Ca_04661 Cicer arietinum Ca_04661 N 0.729
Ca_04665 Cicer arietinum Ca_04665 N 0.708
Cla006571 Citrullus lanatus Cla006571 N 0.708
Pm021070 Prunus mume Pm021070 N 0.729
Pm021071 Prunus mume Pm021071 N 0.708
29613.m000367 Ricinus communis 29613.m000367 N 0.729
30099.m001671 Ricinus communis 30099.m001671 N 0.708
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.729
Ca_04660 Cicer arietinum Ca_04660 N 0.708
Ca_04659 Cicer arietinum Ca_04659 N 0.708
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.708
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.708
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.729
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.708
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.708
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.708
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.708
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708