LjSGA_147985.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_147985.1 T259406_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.741 0.741
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_147985.1 MADS box 10 36

Links

Other MADS box family TFs
Other Lotus japonicus TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.741
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.741
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.741
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.704
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.741
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.741
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.741
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.741
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.704
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.778
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.778
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.741
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.741
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.741
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.778
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.778
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.778
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.963
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.926
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.815
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.704
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.741
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.741
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.704
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.741
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.778
MDP0000925348 Malus domestica MDP0000925348 I 0.778
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.815
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.704
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.815
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.792
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.741
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.704
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.741
TCM_026842 Theobroma cacao TCM_026842 I 0.778
TCM_025671 Theobroma cacao TCM_025671 I 0.741
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.778
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.778
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.741
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.741
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.741
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.741
Bra029469 Brassica rapa Bra029469 I 0.741
Bra018490 Brassica rapa Bra018490 I 0.741
Bo9g078450 Brassica oleracea Bo9g078450 I 0.741
Bo2g104810 Brassica oleracea Bo2g104810 I 0.704
TCM_026845 Theobroma cacao TCM_026845 I 0.704
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.778
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.704
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.704
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
Ca_06495 Cicer arietinum Ca_06495 I 0.778
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.741
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.704
Ca_13275 Cicer arietinum Ca_13275 I 0.741
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.704
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.704
MTR_2g035610 Medicago truncatula MTR_2g035610 N 0.704
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.704
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.741
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.778
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.778
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.704
MTR_4g032290 Medicago truncatula MTR_4g032290 N 0.704
MTR_5g047580 Medicago truncatula MTR_5g047580 N 0.741
Ca_03592 Cicer arietinum Ca_03592 N 0.704
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.704
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.741
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.778
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.704
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.704
PRUPE_ppa022382mg Prunus persica PRUPE_ppa022382mg N 0.704
Pm007730 Prunus mume Pm007730 N 0.704
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.704
Gorai.013G210600 Gossypium raimondii Gorai.013G210600 N 0.704
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.741