SROB_0002013401 (Schistosoma rodhaini)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 SROB_0002013401 T259649_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
srfA
M02283_2.00
Dictyostelium discoideum
MYDWWWNNRD

HYNNWWWHRK
PBM
Weirauch et al.(2014)
pTH5539
0.708 0.708
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.708 0.708
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.708 0.708
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.708 0.708
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.708 0.708
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.708 0.708
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.708 0.708
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.708 0.708
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.708 0.708
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.708 0.708
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.708 0.708
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.708 0.708
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.708 0.708
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.708 0.708
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.708 0.708
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.708 0.708
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.708 0.708
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.708 0.708
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.708 0.708
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.708 0.708
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.708 0.708
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.708 0.708
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0002013401-mRNA-1 MADS box 121 168

Links

Other MADS box family TFs
Other Schistosoma rodhaini TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A_01192 Schistosoma haematobium A_01192 I 0.979
Brh_R011000 Buceros rhinoceros Brh_R011000 I 0.769
CAOG_01457 Capsaspora owczarzaki CAOG_01457 I 0.708
csin112160 Clonorchis sinensis csin112160 N 0.812
srfA Dictyostelium discoideum DDB_G0281387 D 0.708
DI09_81p70 Microsporidia sp DI09_81p70 I 0.708
ECANG7_07506 Echinococcus canadensis ECANG7_07506 I 0.896
ECPE_0001369301 Echinostoma caproni ECPE_0001369301 I 0.812
EFA85834.1 Polysphondylium pallidum EFA85834.1 I 0.708
EmuJ_000377500 Echinococcus multilocularis EmuJ_000377500 I 0.896
SRF Anolis carolinensis ENSACAG00000004798 I 0.708
ENSAMEG00000012452 Ailuropoda melanoleuca ENSAMEG00000012452 I 0.708
ENSAMXG00000001100 Astyanax mexicanus ENSAMXG00000001100 I 0.708
ENSAMXG00000003129 Astyanax mexicanus ENSAMXG00000003129 I 0.708
SRF Bos taurus ENSBTAG00000012777 I 0.708
ENSBTAP00000016981-D1 Bos grunniens ENSBTAP00000016981-D1 I 0.708
SRF Canis familiaris ENSCAFG00000001829 I 0.708
SRF Callithrix jacchus ENSCJAG00000005223 I 0.708
ENSCSAG00000011622 Chlorocebus sabaeus ENSCSAG00000011622 I 0.708
srfa Danio rerio ENSDARG00000053918 I 0.708
srfb Danio rerio ENSDARG00000102867 I 0.708
SRF Dasypus novemcinctus ENSDNOG00000014133 I 0.708
SRF Equus caballus ENSECAG00000009068 I 0.708
SRF Felis catus ENSFCAG00000025180 I 0.708
SRF Homo sapiens ENSG00000112658 D 0.708
SRF Gasterosteus aculeatus ENSGACG00000003778 I 0.708
srfa Gasterosteus aculeatus ENSGACG00000020002 I 0.708
SRF Gorilla gorilla ENSGGOG00000006293 I 0.769
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 0.769
ENSGMOG00000008883 Gadus morhua ENSGMOG00000008883 I 0.708
ENSLACG00000014404 Latimeria chalumnae ENSLACG00000014404 I 0.708
ENSLOCG00000015887 Lepisosteus oculatus ENSLOCG00000015887 I 0.708
ENSMICG00000008327 Microcebus murinus ENSMICG00000008327 I 0.708
SRF Macaca mulatta ENSMMUG00000000033 I 0.708
SRF Monodelphis domestica ENSMODG00000018981 I 0.708
ENSMPUG00000013090 Mustela putorius furo ENSMPUG00000013090 I 0.708
Srf Mus musculus ENSMUSG00000015605 D 0.708
ENSNLEG00000004203 Nomascus leucogenys ENSNLEG00000004203 I 0.708
SRF Oryctolagus cuniculus ENSOCUG00000002892 I 0.708
SRF Otolemur garnettii ENSOGAG00000029623 I 0.708
ENSONIG00000010161 Oreochromis niloticus ENSONIG00000010161 I 0.708
ENSONIG00000010505 Oreochromis niloticus ENSONIG00000010505 I 0.708
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 0.769
SRF Oryzias latipes ENSORLG00000013036 I 0.708
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.700
ENSPANG00000006410 Papio anubis ENSPANG00000006410 I 0.708
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.708
ENSPFOG00000022718 Poecilia formosa ENSPFOG00000022718 I 0.708
ENSPPYG00000016633 Pongo abelii ENSPPYG00000016633 I 0.708
SRF Pan troglodytes ENSPTRG00000018189 I 0.708
SRF Pteropus vampyrus ENSPVAG00000008728 I 0.708
Srf Rattus norvegicus ENSRNOG00000018232 I 0.708
SRF Sus scrofa ENSSSCG00000001661 I 0.708
ENSSTOG00000014222 Ictidomys tridecemlineatus ENSSTOG00000014222 I 0.708
srfa Tetraodon nigroviridis ENSTNIG00000002923 I 0.708
SRF Tetraodon nigroviridis ENSTNIG00000013420 I 0.708
srfa Takifugu rubripes ENSTRUG00000011448 I 0.708
SRF Takifugu rubripes ENSTRUG00000017531 I 0.708
SRF Tursiops truncatus ENSTTRG00000007017 I 0.708
SRF Vicugna pacos ENSVPAG00000008912 I 0.769
ENSXMAG00000006964 Xiphophorus maculatus ENSXMAG00000006964 I 0.708
estExt_fgeneshDP_kg.C_1450001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_1450001 I 0.708
estExt_fgeneshNG_pg.C_520029 Naegleria gruberi estExt_fgeneshNG_pg.C_520029 I 0.708
HDID_0000576901 Hymenolepis diminuta HDID_0000576901 I 0.896
HelroG137972 Helobdella robusta HelroG137972 I 0.708
HmN_000858800 Hymenolepis microstoma HmN_000858800 I 0.896
HNAJ_0000775201 Hymenolepis nana HNAJ_0000775201 I 0.896
MCOS_0000609801 Mesocestoides corti MCOS_0000609801 I 0.896
ML154140a Mnemiopsis leidyi ML154140a I 0.708
NBO_404g0004 Nosema bombycis NBO_404g0004 I 0.708
NBO_73g0004 Nosema bombycis NBO_73g0004 I 0.708
NBO_81g0015 Nosema bombycis NBO_81g0015 I 0.708
NEMVEDRAFT_v1g164599 Nematostella vectensis NEMVEDRAFT_v1g164599 I 0.708
Pvit_03053 Pogona vitticeps Pvit_03053 I 0.708
SCUD_0000460501 Schistosoma curassoni SCUD_0000460501 I 0.979
SINV23954 Solenopsis invicta SINV23954 I 0.704
Sjc_0026780 Schistosoma japonicum Sjc_0026780 I 0.958
Smp_097730 Schistosoma mansoni Smp_097730 I 0.979
SMRZ_0002507801 Schistosoma margrebowiei SMRZ_0002507801 I 0.979
SMTD_0001950801 Schistosoma mattheei SMTD_0001950801 I 0.979
SMU15039528 Schmidtea mediterranea SMU15039528 N 0.771
SPER_0002407601 Spirometra erinaceieuropaei SPER_0002407601 N 0.771
SPER_0003232401 Spirometra erinaceieuropaei SPER_0003232401 N 0.771
SSLN_0001407901 Schistocephalus solidus SSLN_0001407901 N 0.771
T265_07052 Opisthorchis viverrini T265_07052 N 0.812
TASK_0000457101 Taenia asiatica TASK_0000457101 I 0.896
TsM_000925700 Taenia solium TsM_000925700 I 0.896
TTAC_0000870401 Hydatigera taeniaeformis TTAC_0000870401 I 0.896
srf Xenopus tropicalis XB-GENE-482036 I 0.708
srf.L Xenopus laevis XB-GENE-864819 I 0.708