CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT1G01520
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT1G01520
T266317_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK02532.1
M02347_2.00
Cannabis sativa
WAATATCTN
NAGATATTW
PBM
Weirauch et al.(2014)
pTH9579
0.868
0.913
RVE8
M01074_2.00
Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN
PBM
Sullivan et al.(2014)
pTH7136
0.860
0.891
RVE8
M07069_2.00
Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN
Dap-seq
OMalley et al.(2016)
At3g09600_col_a
0.860
0.891
RVE8
M07070_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a
0.860
0.891
RVE4
M07117_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LCL1_colamp_a
0.860
0.891
RVE4
M07118_2.00
Arabidopsis thaliana
NAAAATATCT
AGATATTTTN
Dap-seq
OMalley et al.(2016)
LCL1_col
0.860
0.891
RVE6
M01081_2.00
Arabidopsis thaliana
AATATCTD
HAGATATT
PBM
Sullivan et al.(2014)
pTH7151
0.858
0.891
RVE6
M07138_2.00
Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At5g52660_col_a
0.858
0.891
RVE6
M07139_2.00
Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN
Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a
0.858
0.891
mybG
M02319_2.00
Dictyostelium discoideum
WAATATCT
AGATATTW
PBM
Weirauch et al.(2014)
pTH5362
0.838
0.870
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN
NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.824
0.935
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.824
0.935
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.824
0.935
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN
NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.696
0.674
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G01520.1
Myb
61
106
RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYF
AT1G01520.2
Myb
61
106
RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYF
AT1G01520.3
Myb
61
106
RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYF
AT1G01520.4
Myb
61
106
RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
313 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy