CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HHO3
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT1G25550
T266341_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.MPK6 appears to be associated with the microsomal compartment and may be involved in mediating secretory processes.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN
NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
(Direct)
(Direct)
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY
RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
(Direct)
(Direct)
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY
RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN
NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.848
0.872
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN
NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.891
0.957
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY
RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.891
0.957
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC
GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.891
0.957
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN
NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.852
0.915
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY
RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.835
0.894
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC
GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.835
0.894
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT
ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.769
0.787
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN
NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.769
0.787
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN
NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.800
0.851
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN
NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.773
0.851
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN
NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.773
0.851
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY
RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.773
0.851
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH
DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.714
0.830
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY
RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.714
0.830
For this family, TFs with SR scores >
0.661
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02289_2.00
Myb
51
102
RRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G25550.1
Myb
211
262
RRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYR
AT1G25550.2
Myb
211
262
RRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQVTK
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
372 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy