CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CCA1
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT2G46830
T266414_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN
NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
(Direct)
(Direct)
CCA1
M11039_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN
NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.863
0.891
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT
AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.836
0.870
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.836
0.870
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.744
0.739
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH
DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.744
0.739
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.744
0.739
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.744
0.739
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.744
0.739
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT
AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.738
0.804
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.738
0.804
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW
WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.738
0.804
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN
NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.730
0.783
For this family, TFs with SR scores >
0.661
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00875_2.00
Myb
24
69
RERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFF
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G46830.1
Myb
24
69
RERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFF
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
294 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy