SRM1 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G08520 T266525_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.MPK6 appears to be associated with the microsomal compartment and may be involved in mediating secretory processes.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SRM1
M02307_2.00
Arabidopsis thaliana
NNHNATCNN

NNGATNDNN
PBM
Weirauch et al.(2014)
pTH7080
(Direct) (Direct)
SRM1
M07121_2.00
Arabidopsis thaliana
YCTTATCYWHW

WDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a
(Direct) (Direct)
SRM1
M07122_2.00
Arabidopsis thaliana
YCTTATCYWHWWH

DWWDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_col_b
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02307_2.00 Myb 119 164

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G08520.1 Myb 119 164

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK13672.1 Cannabis sativa PK13672.1 I 0.691
Carubv10003231m.g Capsella rubella Carubv10003231m.g I 0.678
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.853
Cagra.25796s0001 Capsella grandiflora Cagra.25796s0001 I 0.677
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.853
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.896
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.750
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.708
mgf009460m Mimulus guttatus mgf009460m I 0.661
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.703
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.713
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.733
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.731
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.708
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.893
Thhalv10005383m.g Eutrema salsugineum Thhalv10005383m.g I 0.716
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.681
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.734
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.733
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.661
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.735
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.726
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.724
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.735
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.724
30131.m007263 Ricinus communis 30131.m007263 I 0.749
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.717
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.717
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.729
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.904
Bra028654 Brassica rapa Bra028654 I 0.807
Bra009699 Brassica rapa Bra009699 I 0.675
Bra009346 Brassica rapa Bra009346 I 0.825
Bo9g174380 Brassica oleracea Bo9g174380 I 0.846
Bo7g097510 Brassica oleracea Bo7g097510 I 0.675
Bo3g004970 Brassica oleracea Bo3g004970 I 0.803
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.734
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.661
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.724
Pm006046 Prunus mume Pm006046 I 0.690
Cla020348 Citrullus lanatus Cla020348 I 0.716
Cla009230 Citrullus lanatus Cla009230 I 0.713
Ca_19000 Cicer arietinum Ca_19000 I 0.677
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.713
TCM_007672 Theobroma cacao TCM_007672 I 0.724
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.728
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.669
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.715
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.729
Bo2g009130 Brassica oleracea Bo2g009130 I 0.792