CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AtMYB78
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT5G49620
T266561_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
putative transcription factor MYB108 (MYB108) mRNA
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB108
M07065_2.00
Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY
Dap-seq
OMalley et al.(2016)
BOS1_col_a
0.795
0.892
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.699
0.809
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.699
0.809
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.700
0.763
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.700
0.763
MYB05_ANTMA
M11067_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.677
0.849
ATMYB121
M07091_2.00
Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN
Dap-seq
OMalley et al.(2016)
MYB121_col_a
0.664
0.688
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G49620.1
Myb
28
75
RGPWTVEEDLELINYIASHGEGRWNSLARCAELKRTGKSCRLRWLNYL
AT5G49620.1
Myb
81
126
RGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRV
AT5G49620.2
Myb
28
75
RGPWTVEEDLELINYIASHGEGRWNSLARCAELKRTGKSCRLRWLNYL
AT5G49620.2
Myb
81
140
RGNITLEEQLLILELHTRWGNSNEFDHKFSSSCEDRWSKIAQYLPGRTDNEIKNYWRTRV
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
444 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy