CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo7g116160
(
Brassica oleracea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bo7g116160
T267529_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN
NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.697
0.677
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD
HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.697
0.677
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH
DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.668
0.656
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD
HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.668
0.656
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo7g116160.1
Myb
18
64
KGLWKPFEDDKLKQLVEQYGPQNWNIIGELFSGRTGQSCRQRWCNQL
Bo7g116160.1
Myb
70
115
KGPFTKEEEERLLEAHRIHGNRWAYIAKLFPGRTDNALKNHYHVTM
Links
Other
Myb/SANT
family TFs
Other
Brassica oleracea
TFs
192 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra037004
Brassica rapa
Bra037004
N
0.836
30137.m000436
Ricinus communis
30137.m000436
I
0.753
cassava5849.m1
Manihot esculenta
cassava5849.m1
I
0.753
POPTR_0007s04140
Populus trichocarpa
POPTR_0007s04140
I
0.748
SapurV1A.0171s0440
Salix purpurea
SapurV1A.0171s0440
I
0.748
POPTR_0005s06410
Populus trichocarpa
POPTR_0005s06410
I
0.746
SapurV1A.0916s0130
Salix purpurea
SapurV1A.0916s0130
I
0.732
SapurV1A.1092s0010
Salix purpurea
SapurV1A.1092s0010
I
0.732
PDK_20s1366461g001
Phoenix dactylifera
PDK_20s1366461g001
I
0.724
GSMUA_Achr9G08480_001
Musa acuminata
GSMUA_Achr9G08480_001
I
0.720
Cucsa.016540
Cucumis sativus
Cucsa.016540
I
0.718
ATMYB69
Vitis vinifera
VIT_04s0044g01380
I
0.717
Cagra.4894s0009
Capsella grandiflora
Cagra.4894s0009
I
0.710
Bostr.10273s0016
Boechera stricta
Bostr.10273s0016
I
0.710
Bo6g116800
Brassica oleracea
Bo6g116800
I
0.710
ATMYB54
Arabidopsis thaliana
AT1G73410
I
0.710
Bra015992
Brassica rapa
Bra015992
I
0.710
Carubv10021434m.g
Capsella rubella
Carubv10021434m.g
I
0.710
ATMYB54
Arabidopsis lyrata
Al_scaffold_0002_2037
I
0.710
Bo2g080540
Brassica oleracea
Bo2g080540
I
0.710
TCM_001496
Theobroma cacao
TCM_001496
I
0.710
Bra008096
Brassica rapa
Bra008096
I
0.710
Thhalv10019669m.g
Eutrema salsugineum
Thhalv10019669m.g
I
0.710
Carubv10006783m.g
Capsella rubella
Carubv10006783m.g
I
0.709
Cagra.0844s0037
Capsella grandiflora
Cagra.0844s0037
I
0.709
Bo1g008140
Brassica oleracea
Bo1g008140
I
0.709
Bra011441
Brassica rapa
Bra011441
I
0.709
ATMYB69
Arabidopsis thaliana
AT4G33450
I
0.709
ATMYB69
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_7000654
I
0.709
Thhalv10008597m.g
Eutrema salsugineum
Thhalv10008597m.g
I
0.706
GSMUA_Achr3G16490_001
Musa acuminata
GSMUA_Achr3G16490_001
I
0.706
SapurV1A.3733s0010
Salix purpurea
SapurV1A.3733s0010
I
0.705
SapurV1A.1664s0020
Salix purpurea
SapurV1A.1664s0020
I
0.705
Thhalv10026063m.g
Eutrema salsugineum
Thhalv10026063m.g
I
0.700
Bostr.7867s1191
Boechera stricta
Bostr.7867s1191
I
0.700
mgf018311m
Mimulus guttatus
mgf018311m
I
0.700
Bo8g104600
Brassica oleracea
Bo8g104600
I
0.697
Cagra.2175s0026
Capsella grandiflora
Cagra.2175s0026
I
0.697
ATMYB52
Arabidopsis lyrata
scaffold_102001.1
I
0.697
Bra031008
Brassica rapa
Bra031008
I
0.697
MYB52
Arabidopsis thaliana
AT1G17950
D
0.697
Carubv10012605m.g
Capsella rubella
Carubv10012605m.g
I
0.697
PDK_20s1619721g001
Phoenix dactylifera
PDK_20s1619721g001
I
0.696
PDK_20s1649141g001
Phoenix dactylifera
PDK_20s1649141g001
I
0.694
GSMUA_Achr9G15750_001
Musa acuminata
GSMUA_Achr9G15750_001
I
0.694
PK01212.1
Cannabis sativa
PK01212.1
I
0.691
AMTR_s00186p00015620
Amborella trichopoda
AMTR_s00186p00015620
I
0.688
SELMODRAFT_8484
Selaginella moellendorffii
SELMODRAFT_8484
I
0.688
SELMODRAFT_38644
Selaginella moellendorffii
SELMODRAFT_38644
I
0.688
e_gw1.91.11.1
Physcomitrella patens
e_gw1.91.11.1
I
0.688
gw1.200.30.1
Physcomitrella patens
gw1.200.30.1
I
0.688
gw1.76.8.1
Physcomitrella patens
gw1.76.8.1
I
0.688
gw1.2.29.1
Physcomitrella patens
gw1.2.29.1
I
0.687
Sb03g010970
Sorghum bicolor
Sb03g010970
I
0.687
MDP0000878006
Malus domestica
MDP0000878006
I
0.686
MDP0000172476
Malus domestica
MDP0000172476
I
0.686
Solyc04g064540.2
Solanum lycopersicum
Solyc04g064540.2
I
0.685
PGSC0003DMG400024822
Solanum tuberosum
PGSC0003DMG400024822
I
0.685
POPTR_0005s20870
Populus trichocarpa
POPTR_0005s20870
I
0.682
Bo3g170700
Brassica oleracea
Bo3g170700
I
0.679
Bo8g067590
Brassica oleracea
Bo8g067590
I
0.677
cassava12378.valid.m1
Manihot esculenta
cassava12378.valid.m1
I
0.677
GSMUA_Achr3G07700_001
Musa acuminata
GSMUA_Achr3G07700_001
I
0.676
Sb03g010960
Sorghum bicolor
Sb03g010960
I
0.675
PRUPE_ppa006434mg
Prunus persica
PRUPE_ppa006434mg
I
0.675
cassava25953.m1
Manihot esculenta
cassava25953.m1
I
0.675
GRMZM2G111731
Zea mays
GRMZM2G111731
I
0.675
PK28773.1
Cannabis sativa
PK28773.1
I
0.675
AMTR_s00119p00105590
Amborella trichopoda
AMTR_s00119p00105590
I
0.675
GLYMA03G00980
Glycine max
GLYMA03G00980
I
0.675
Pm025457
Prunus mume
Pm025457
I
0.675
Pavir.Ea01097
Panicum virgatum
Pavir.Ea01097
I
0.675
GRMZM2G312419
Zea mays
GRMZM2G312419
I
0.675
GSMUA_Achr10G12830_001
Musa acuminata
GSMUA_Achr10G12830_001
I
0.675
MDP0000755899
Malus domestica
MDP0000755899
I
0.675
gene29254-v1.0-hybrid
Fragaria vesca
gene29254-v1.0-hybrid
I
0.675
evm.TU.supercontig_73.4
Carica papaya
evm.TU.supercontig_73.4
I
0.675
GSMUA_Achr9G04990_001
Musa acuminata
GSMUA_Achr9G04990_001
I
0.675
POPTR_0013s06320
Populus trichocarpa
POPTR_0013s06320
I
0.675
Ciclev10020631m.g
Citrus clementina
Ciclev10020631m.g
I
0.675
GSMUA_Achr6G32250_001
Musa acuminata
GSMUA_Achr6G32250_001
I
0.675
Gorai.009G251700
Gossypium raimondii
Gorai.009G251700
I
0.673
Pm022705
Prunus mume
Pm022705
I
0.673
MDP0000291518
Malus domestica
MDP0000291518
I
0.673
Ciclev10001803m.g
Citrus clementina
Ciclev10001803m.g
I
0.673
MDP0000852158
Malus domestica
MDP0000852158
I
0.673
orange1.1g020106m.g
Citrus sinensis
orange1.1g020106m.g
I
0.673
Pavir.J16832
Panicum virgatum
Pavir.J16832
I
0.673
Gorai.013G106600
Gossypium raimondii
Gorai.013G106600
I
0.673
TCM_035359
Theobroma cacao
TCM_035359
I
0.673
PRUPE_ppa016398mg
Prunus persica
PRUPE_ppa016398mg
I
0.673
GLYMA06G12691
Glycine max
GLYMA06G12691
I
0.673
GLYMA04G42110
Glycine max
GLYMA04G42110
I
0.673
MTR_3g089045
Medicago truncatula
MTR_3g089045
I
0.673
chr2.CM0641.440.nd
Lotus japonicus
chr2.CM0641.440.nd
I
0.672
GLYMA02G12105
Glycine max
GLYMA02G12105
I
0.672
MDP0000136541
Malus domestica
MDP0000136541
I
0.672
ONIVA01G13400
Oryza nivara
ONIVA01G13400
I
0.672
cassava3020.m1
Manihot esculenta
cassava3020.m1
I
0.672
GLYMA01G05980
Glycine max
GLYMA01G05980
I
0.672
MDP0000146675
Malus domestica
MDP0000146675
I
0.672
OGLUM01G12520
Oryza glumaepatula
OGLUM01G12520
I
0.672
OMERI01G10960
Oryza meridionalis
OMERI01G10960
I
0.672
OPUNC01G10870
Oryza punctata
OPUNC01G10870
I
0.672
evm.TU.contig_27928.1
Carica papaya
evm.TU.contig_27928.1
I
0.672
ORUFI01G12050
Oryza rufipogon
ORUFI01G12050
I
0.672
OS01G0274800
Oryza sativa
OS01G0274800
I
0.672
Bostr.7128s0403
Boechera stricta
Bostr.7128s0403
I
0.672
PK20989.1
Cannabis sativa
PK20989.1
I
0.672
MTR_5g041570
Medicago truncatula
MTR_5g041570
I
0.672
MTR_4g082040
Medicago truncatula
MTR_4g082040
I
0.672
Ca_16374
Cicer arietinum
Ca_16374
I
0.672
GLYMA20G04511
Glycine max
GLYMA20G04511
I
0.672
GLYMA07G35581
Glycine max
GLYMA07G35581
I
0.672
Pavir.Hb01200
Panicum virgatum
Pavir.Hb01200
I
0.672
evm.TU.supercontig_7.125
Carica papaya
evm.TU.supercontig_7.125
I
0.671
GSMUA_Achr10G05080_001
Musa acuminata
GSMUA_Achr10G05080_001
I
0.671
POPTR_0015s05130
Populus trichocarpa
POPTR_0015s05130
I
0.670
30000.m000380
Ricinus communis
30000.m000380
I
0.670
SELMODRAFT_6100
Selaginella moellendorffii
SELMODRAFT_6100
I
0.670
Si011791m.g
Setaria italica
Si011791m.g
I
0.670
SELMODRAFT_6091
Selaginella moellendorffii
SELMODRAFT_6091
I
0.670
POPTR_0019s05740
Populus trichocarpa
POPTR_0019s05740
I
0.670
SapurV1A.0074s0390
Salix purpurea
SapurV1A.0074s0390
I
0.670
Bra034565
Brassica rapa
Bra034565
I
0.669
Solyc10g081320.1
Solanum lycopersicum
Solyc10g081320.1
I
0.669
Si026751m.g
Setaria italica
Si026751m.g
I
0.669
Pavir.J04678
Panicum virgatum
Pavir.J04678
I
0.669
Cucsa.284980
Cucumis sativus
Cucsa.284980
I
0.669
PGSC0003DMG400028119
Solanum tuberosum
PGSC0003DMG400028119
I
0.669
Cla010359
Citrullus lanatus
Cla010359
I
0.669
Gorai.007G002200
Gossypium raimondii
Gorai.007G002200
I
0.669
Thhalv10014113m.g
Eutrema salsugineum
Thhalv10014113m.g
I
0.668
LPERR01G10360
Leersia perrieri
LPERR01G10360
I
0.668
AtMYB56
Arabidopsis lyrata
fgenesh2_kg.6__1780__AT5G17800.1
I
0.668
Cagra.6254s0026
Capsella grandiflora
Cagra.6254s0026
I
0.668
MYB56
Arabidopsis thaliana
AT5G17800
D
0.668
Cla000326
Citrullus lanatus
Cla000326
I
0.668
Bostr.26527s0427
Boechera stricta
Bostr.26527s0427
I
0.668
Bra016575
Brassica rapa
Bra016575
I
0.668
e_gw1.219.38.1
Physcomitrella patens
e_gw1.219.38.1
I
0.668
Carubv10001376m.g
Capsella rubella
Carubv10001376m.g
I
0.668
28838.m000246
Ricinus communis
28838.m000246
I
0.667
cassava9262.m1
Manihot esculenta
cassava9262.m1
I
0.667
PRUPE_ppa021779mg
Prunus persica
PRUPE_ppa021779mg
I
0.667
orange1.1g025697m.g
Citrus sinensis
orange1.1g025697m.g
I
0.667
SapurV1A.1601s0030
Salix purpurea
SapurV1A.1601s0030
I
0.667
TCM_013357
Theobroma cacao
TCM_013357
I
0.667
SapurV1A.0118s0380
Salix purpurea
SapurV1A.0118s0380
I
0.667
ATMYB52
Vitis vinifera
VIT_17s0000g01890
I
0.667
Cucsa.077160
Cucumis sativus
Cucsa.077160
I
0.667
Cla014084
Citrullus lanatus
Cla014084
I
0.667
MDP0000265114
Malus domestica
MDP0000265114
I
0.667
SapurV1A.2371s0030
Salix purpurea
SapurV1A.2371s0030
I
0.667
gene09311-v1.0-hybrid
Fragaria vesca
gene09311-v1.0-hybrid
I
0.667
PK17670.1
Cannabis sativa
PK17670.1
I
0.667
Ciclev10021859m.g
Citrus clementina
Ciclev10021859m.g
I
0.667
POPTR_0007s01430
Populus trichocarpa
POPTR_0007s01430
I
0.667
SapurV1A.1660s0020
Salix purpurea
SapurV1A.1660s0020
I
0.666
Pavir.Fa00885
Panicum virgatum
Pavir.Fa00885
I
0.666
mgf006675m
Mimulus guttatus
mgf006675m
I
0.666
SapurV1A.1416s0010
Salix purpurea
SapurV1A.1416s0010
I
0.666
Pavir.Fb01599
Panicum virgatum
Pavir.Fb01599
I
0.666
LPERR08G13020
Leersia perrieri
LPERR08G13020
I
0.666
BRADI3G36740
Brachypodium distachyon
BRADI3G36740
I
0.666
GRMZM2G428555
Zea mays
GRMZM2G428555
I
0.666
OB08G23250
Oryza brachyantha
OB08G23250
I
0.666
Sb07g021280
Sorghum bicolor
Sb07g021280
I
0.666
Pavir.J21755
Panicum virgatum
Pavir.J21755
I
0.665
Si005038m.g
Setaria italica
Si005038m.g
I
0.665
Si004691m.g
Setaria italica
Si004691m.g
I
0.665
Bra006422
Brassica rapa
Bra006422
I
0.664
Bo3g012780
Brassica oleracea
Bo3g012780
I
0.664
Aquca_022_00293
Aquilegia coerulea
Aquca_022_00293
I
0.664
evm.TU.supercontig_480.4
Carica papaya
evm.TU.supercontig_480.4
I
0.663
PGSC0003DMG400031044
Solanum tuberosum
PGSC0003DMG400031044
I
0.663
Sb05g009460
Sorghum bicolor
Sb05g009460
I
0.663
Gorai.008G293100
Gossypium raimondii
Gorai.008G293100
I
0.663
Lus10031326.g
Linum usitatissimum
Lus10031326.g
I
0.663
Lus10031900.g
Linum usitatissimum
Lus10031900.g
I
0.663
OS08G0435700
Oryza sativa
OS08G0435700
I
0.662
BGIOSGA028724
Oryza indica
BGIOSGA028724
I
0.662
ORUFI08G17710
Oryza rufipogon
ORUFI08G17710
I
0.662
Ca_03919
Cicer arietinum
Ca_03919
I
0.662
OPUNC08G13850
Oryza punctata
OPUNC08G13850
I
0.662
OMERI08G13100
Oryza meridionalis
OMERI08G13100
I
0.662
OGLUM08G16550
Oryza glumaepatula
OGLUM08G16550
I
0.662
ORGLA08G0138700
Oryza glaberrima
ORGLA08G0138700
I
0.662
ONIVA08G17040
Oryza nivara
ONIVA08G17040
I
0.662
Pavir.J31094
Panicum virgatum
Pavir.J31094
I
0.662
OBART08G15790
Oryza barthii
OBART08G15790
I
0.662
POPTR_0012s03650
Populus trichocarpa
POPTR_0012s03650
I
0.661